SCN Proteipedia

Hg_chrom6_TN10mRNA_13075

Organism: Heterodera glycines Gene Locus: chr6:11632000-11646129 Feature type: polypeptide

Protein Sequence

Length: 976

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.084	0.929	1.025	0.813	0.939	0.998	1.049	1.23	1.343	1.329	0.885	1.507	0.939	1.005	1.15	0.673	0.789	1.195	0.473	0.392	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12319	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.966

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RRVEIGHGPQEQKHKRT	—	—	—	—	—	—	0.000	—	—	0.313	0.297	0.086	0.655	0.137	0.134	0.129	0.031	0.094	0.095

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010879	1.000	1.000	Hsc_gene_1790.t1	Hsc_gene_1789.t1;Hsc_gene_1790.t1	—	Q922D8.4 C-1-tetrahydrofolate synthase, cytoplasmic [Mus musculus]	KAI1732180.1 formate--tetrahydrofolate ligase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824\|GO:0004329\|GO:0004488\|GO:0005524	GO:0005575_0.843\|GO:0110165_0.843\|GO:0008150_0.770\|GO:0005622_0.742\|GO:0005737_0.689\|GO:0016020_0.657\|GO:0009987_0.654\|GO:0003674_0.650\|GO:0043226_0.588\|GO:0008152_0.580\|GO:0043229_0.571\|GO:0043227_0.548\|GO:0044237_0.546\|GO:0043231_0.530	IPR000559+327-976_329-819_342-975_850-976+\|IPR000672+2-295_34-56_75-102_112-133_163-183_212-241_251-267_268-286+\|IPR020628+430-440_711-722+\|IPR020630+5-123+\|IPR020631+118-291_127-291+\|IPR020867+76-101_272-280+\|IPR027417+326-477_330-971_590-827+\|IPR036291+126-291+\|IPR046346+1-124+	—	PF00763+5-123+Tetrahydrofolate_dehydrogenase/cyclohydrolase,_catalytic_domain\|PF01268+329-819_850-976+Formate--tetrahydrofolate_ligase\|PF02882+127-291+Tetrahydrofolate_dehydrogenase/cyclohydrolase,_NAD(P)-binding_domain	G3DSA:3.10.410.10:FF:000001+862-951+Putative_formate--tetrahydrofolate_ligase\|G3DSA:3.40.50.10860:FF:000005+7-147+C-1-tetrahydrofolate_synthase,_cytoplasmic,_putative\|G3DSA:3.40.50.300:FF:000245+328-486+C-1-tetrahydrofolate_synthase,_cytoplasmic\|G3DSA:3.40.50.720:FF:000006+143-271+Bifunctional_protein_FolD	PTHR48099+2-290+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-976	4jki_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.725	105961.320	7.659	14.000	25.205	7.787	42.623	57.377	13.934	11.270	52.766

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	2795.838	4743.313	1964.722	2766.103	6129.154	4126.007	4537.278	1796.200	127.781	2362.413	1404.714

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.502	-0.915	0.603	1.116	-0.557	0.147	-1.309	1.481	-4.345	4.623	—	—	—

No JSON data available for plots.

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