Hg_chrom6_TN10mRNA_13078
Organism: Heterodera glycines Gene Locus: chr6:11665254-11683080 Feature type: polypeptideProtein Sequence
Length: 2,069
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.955 | 1.54 | 0.923 | 0.833 | 0.789 | 1.723 | 0.742 | 1.788 | 0.87 | 1.078 | 0.549 | 1.478 | 1.437 | 1.032 | 0.779 | 1.429 | 1.038 | 0.754 | 0.372 | 0.654 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12322
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.953
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.155
|
0.430
|
0.051
|
0.363
|
0.310
|
0.517
|
0.428
|
0.093
|
0.309
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001180
|
3.000
|
2.000
|
Hsc_gene_1791.t1;Hsc_gene_1793.t1
|
Hsc_gene_1791.t1
|
— |
Q80XK6.3 Autophagy-related protein 2 homolog B [Mus musculus]
|
KAI1732177.1 autophagy-related protein 2 like protein B [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006914
|
GO:0008150_0.973|GO:0009987_0.926|GO:0003674_0.860|GO:0016043_0.814|GO:0071840_0.814|GO:0051179_0.624|GO:0006810_0.598|GO:0051234_0.598|GO:0005575_0.552|GO:0110165_0.544|GO:0061024_0.538|GO:0033036_0.537|GO:0008152_0.527|GO:0044237_0.505|GO:0010876_0.503
|
IPR026849+4-1895+|IPR026854+8-110+
|
— |
PF12624+8-110+VPS13-like,_N-terminal
|
— |
PTHR13190+4-1895+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
373-584;1714-2069
|
2.000
|
1-372;585-1713
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
226934.290
|
6.231
|
-12.000
|
20.831
|
11.455
|
50.507
|
49.493
|
11.020
|
9.812
|
55.244
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1945.583
|
3631.536
|
1706.200
|
1214.175
|
1344.145
|
1666.601
|
1819.197
|
2371.032
|
1260.588
|
2409.153
|
1916.911
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.319
|
-1.718
|
-0.383
|
— |
0.325
|
— |
0.400
|
— | — | — | — | — | — |
No JSON data available for plots.