Hg_chrom6_TN10mRNA_13079
Organism: Heterodera glycines Gene Locus: chr6:11684842-11717804 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.26 | 0.775 | 1.515 | 0.431 | 1.597 | 0.534 | 0.198 | 1.25 | 0.926 | 1.577 | 1.263 | 2.696 | 0.926 | 0.801 | 0.85 | 0.536 | 0.956 | 0.947 | 0.641 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12323
|
— |
Hg_chrom6_TN10gene_12323
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKLKRYDDMVDAIKKLIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.609
|
0.328
|
0.043
|
0.680
|
0.105
|
0.141
|
0.157
|
0.013
|
0.159
|
0.182
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000907
|
1.000
|
5.000
|
Hsc_gene_11713.t1;Hsc_gene_1782.t1;Hsc_gene_1784.t1;Hsc_gene_22061.t1;Hsc_gene_2936.t1
|
— | — |
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
APO36911.1 14-3-3 protein [Meloidogyne incognita]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.910|GO:0005575_0.833|GO:0110165_0.833|GO:0009987_0.818|GO:0003674_0.749|GO:0005622_0.723|GO:0005488_0.684|GO:0065007_0.682|GO:0005737_0.666|GO:0050789_0.646|GO:0043226_0.607|GO:0016020_0.587|GO:0005515_0.572|GO:0050794_0.547|GO:0051179_0.505
|
IPR000308+6-240_12-238_44-73_91-115_122-144_157-183_184-210_211-240+|IPR023410+12-238_20-238+|IPR036815+2-240_12-238+
|
SM00101+12-238+
|
PF00244+20-238+14-3-3_protein
|
— |
PTHR18860+12-238+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-240
|
8vyo_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.911
|
27432.560
|
4.723
|
-10.000
|
32.917
|
10.000
|
47.917
|
52.083
|
15.000
|
17.917
|
45.417
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
blue
|
1857.155
|
155.737
|
96.221
|
125.061
|
152.133
|
131.863
|
202.498
|
75.091
|
377.513
|
7489.940
|
4441.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.927
|
-0.454
|
0.489
|
0.252
|
— |
0.632
|
-0.915
|
1.575
|
-2.439
|
— |
-3.533
|
— | — |
No JSON data available for plots.