SCN Proteipedia

Hg_chrom6_TN10mRNA_13086

Organism: Heterodera glycines Gene Locus: chr6:11732798-11737734 Feature type: polypeptide

Protein Sequence

Length: 472

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.616	1.084	0.77	1.534	1.271	0.924	0.504	2.119	1.083	1.117	1.252	1.122	1.295	1.059	1.254	0.969	0.972	0.835	0.652	0.872	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12329	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	LRKHK,KKKVSPQCPFCDKRYRN	—	—	44-75	0.809	—	—	0.000	—	—	0.900	0.072	0.030	0.248	0.017	0.018	0.018	0.003	0.048	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002368	2.000	2.000	Hsc_gene_1779.t1;Hsc_gene_1779.t2	Hsc_gene_1779.t1;Hsc_gene_1779.t2;Hsc_gene_1779.t3	—	Q20709.2 Zinc finger protein tra-4 [Caenorhabditis elegans]	KAI1715249.1 zinc finger and SCAN domain-containing protein 5B [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.913\|GO:0009987_0.866\|GO:0005575_0.835\|GO:0110165_0.826\|GO:0065007_0.824\|GO:0050789_0.813\|GO:0005622_0.809\|GO:0003674_0.800\|GO:0050794_0.798\|GO:0005488_0.758\|GO:0008152_0.756\|GO:0043170_0.752\|GO:0043226_0.746\|GO:0009058_0.745\|GO:0044237_0.741\|GO:0019222_0.737\|GO:0044249_0.736\|GO:0031323_0.732\|GO:0043229_0.731\|GO:0009059_0.730\|GO:0060255_0.723\|GO:0010467_0.721\|GO:0016020_0.714\|GO:0009889_0.702\|GO:0031326_0.702\|GO:0010468_0.696\|GO:0010556_0.696\|GO:0043227_0.688\|GO:0043231_0.683\|GO:0005634_0.651\|GO:0032501_0.630\|GO:0032502_0.617\|GO:0048856_0.617\|GO:0048519_0.559\|GO:0007275_0.555\|GO:0044238_0.511	IPR013087+145-168_145-173_147-168_256-279_258-279_310-335_342-365_342-370_344-365_371-393_371-395_373-393_399-422_401-422_424-447_426-447+\|IPR036236+333-380_369-419+	SM00355+145-168_256-279_310-335_342-365_371-393_399-422_424-447+	PF13894+257-279+C2H2-type_zinc_finger	—	PTHR24379+141-448+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	69-112	2.000	1-68;113-472	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.807	54195.170	8.518	22.000	30.508	12.712	51.483	48.517	18.644	11.864	46.610

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1844.852	4751.727	1904.975	1473.119	1405.305	1240.086	1777.218	1723.874	1833.284	1342.651	1552.922

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.548	-1.827	-0.262	-0.100	-0.166	0.531	0.373	—	—	—	—	—	—

No JSON data available for plots.

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