Hg_chrom6_TN10mRNA_13088
Organism: Heterodera glycines Gene Locus: chr6:11742695-11747236 Feature type: polypeptideProtein Sequence
Length: 531
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.964 | 0.964 | 0.993 | 1.039 | 0.659 | 0.869 | 0.381 | 1.412 | 1.046 | 2.036 | 0.599 | 0.886 | 1.308 | 1.376 | 0.922 | 1.56 | 0.957 | 0.827 | 0.29 | 0.443 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12331
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.723
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — |
83-131
|
1.000
|
— | — |
0.000
|
— | — |
0.543
|
0.257
|
0.015
|
0.578
|
0.136
|
0.197
|
0.151
|
0.061
|
0.138
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003918
|
2.000
|
1.000
|
Hsc_gene_1776.t1
|
— | — | — |
KHN75532.1 Protein CIP2A [Toxocara canis]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.958|GO:0009987_0.902|GO:0005575_0.630|GO:0110165_0.630|GO:0065007_0.564|GO:0005622_0.559|GO:0050789_0.557|GO:0016020_0.556|GO:0050794_0.533|GO:0003674_0.501
|
IPR016024+58-273+|IPR042510+145-486+|IPR048701+135-344+
|
— |
PF21044+135-344+CIP2A,_N-terminal
|
— |
PTHR23161+145-486+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-531
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
58167.090
|
6.756
|
2.500
|
20.716
|
9.416
|
45.009
|
54.991
|
11.299
|
9.416
|
53.484
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
516.029
|
514.968
|
633.830
|
435.200
|
342.213
|
421.908
|
306.760
|
426.833
|
502.707
|
724.956
|
629.707
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.380
|
-0.434
|
-0.379
|
0.317
|
-0.450
|
— |
-0.334
|
— | — | — | — | — |
No JSON data available for plots.