Hg_chrom6_TN10mRNA_13092
Organism: Heterodera glycines Gene Locus: chr6:11771588-11777562 Feature type: polypeptideProtein Sequence
Length: 425
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.176 | 1.259 | 1.198 | 0.892 | 0.941 | 0.603 | 0.476 | 1.294 | 1.412 | 1.431 | 0.784 | 1.246 | 1.765 | 0.588 | 1.393 | 0.874 | 0.771 | 0.784 | 1.267 | 0.761 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12335
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
47-72
|
0.876
|
— | — |
0.000
|
— | — |
0.562
|
0.127
|
0.018
|
0.604
|
0.113
|
0.261
|
0.178
|
0.018
|
0.170
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002369
|
3.000
|
1.000
|
Hsc_gene_1775.t1
|
Hsc_gene_1775.t1
|
— |
Q9BX70.1 BTB/POZ domain-containing protein 2 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.785|GO:0110165_0.768|GO:0005622_0.667|GO:0008150_0.642|GO:0005737_0.538|GO:0043226_0.516
|
IPR000210+6-131_15-104_15-135+|IPR002083+285-420_310-420+|IPR008974+298-423+|IPR011333+1-162_2-130+|IPR011705+141-249_148-244+
|
SM00225+15-135+|SM00875+141-249+
|
PF00651+6-131+BTB/POZ_domain|PF07707+148-244+BTB_And_C-terminal_Kelch|PF22486+310-420+MATH_domain
|
— |
PTHR45774+4-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-425
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
48393.560
|
7.197
|
4.500
|
26.824
|
13.176
|
45.412
|
54.588
|
14.588
|
12.235
|
47.765
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
499.152
|
32.928
|
108.427
|
138.042
|
115.813
|
136.308
|
394.502
|
78.649
|
299.644
|
1582.308
|
1032.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.489
|
1.931
|
0.457
|
-0.283
|
— |
1.542
|
-0.903
|
2.469
|
— | — | — | — | — |
No JSON data available for plots.