Hg_chrom6_TN10mRNA_13093
Organism: Heterodera glycines Gene Locus: chr6:11771708-11777562 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.177 | 1.289 | 1.227 | 0.831 | 0.964 | 0.494 | 0.488 | 1.205 | 1.392 | 1.465 | 0.803 | 1.134 | 1.807 | 0.649 | 1.377 | 0.861 | 0.711 | 0.803 | 1.297 | 0.78 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12335
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.548
|
0.152
|
0.023
|
0.593
|
0.147
|
0.280
|
0.171
|
0.014
|
0.169
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002369
|
3.000
|
1.000
|
Hsc_gene_1775.t1
|
Hsc_gene_1775.t1
|
— |
Q9BX70.1 BTB/POZ domain-containing protein 2 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.772|GO:0110165_0.754|GO:0005622_0.654|GO:0008150_0.642|GO:0005737_0.537
|
IPR000210+6-121_15-94_15-125+|IPR002083+275-410_300-410+|IPR008974+288-413+|IPR011333+1-152_2-120+|IPR011705+131-239_138-234+
|
SM00225+15-125+|SM00875+131-239+
|
PF00651+6-121+BTB/POZ_domain|PF07707+138-234+BTB_And_C-terminal_Kelch|PF22486+300-410+MATH_domain
|
— |
PTHR45774+4-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-415
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.547
|
47233.220
|
6.981
|
3.000
|
26.988
|
13.253
|
44.819
|
55.181
|
14.458
|
12.530
|
47.952
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
499.152
|
32.928
|
108.427
|
138.042
|
115.813
|
136.308
|
394.502
|
78.649
|
299.644
|
1582.308
|
1032.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.489
|
1.931
|
0.457
|
-0.283
|
— |
1.542
|
-0.903
|
2.469
|
— | — | — | — | — |
No JSON data available for plots.