Hg_chrom6_TN10mRNA_13094
Organism: Heterodera glycines Gene Locus: chr6:11778929-11788021 Feature type: polypeptideProtein Sequence
Length: 489
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.999 | 1.189 | 1.041 | 0.705 | 1.363 | 1.311 | 0.511 | 1.125 | 1.182 | 1.078 | 0.93 | 1.083 | 1.591 | 1.062 | 1.002 | 0.876 | 0.838 | 0.682 | 0.629 | 1.383 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12336
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.840
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KEKAKAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.282
|
0.222
|
0.038
|
0.587
|
0.116
|
0.177
|
0.150
|
0.010
|
0.240
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010886
|
1.000
|
1.000
|
Hsc_gene_6244.t1
|
Hsc_gene_6244.t1
|
— |
P90925.2 Phenylalanine-4-hydroxylase [Caenorhabditis elegans]
|
KAI1712463.1 biopterin-dependent aromatic amino acid hydroxylase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0004505|GO:0005506|GO:0006559|GO:0009072|GO:0016714
|
GO:0008150_0.817|GO:0009987_0.728|GO:0003674_0.719|GO:0005575_0.677|GO:0110165_0.672|GO:0008152_0.636|GO:0003824_0.628|GO:0009058_0.603|GO:0005622_0.541|GO:0044238_0.506|GO:0016491_0.501
|
IPR001273+18-485+|IPR002912+56-116_57-134+|IPR005961+43-482+|IPR018301+311-322+|IPR019773+1-485+|IPR019774+136-482_149-478_177-196_268-290_332-351_372-390_403-422_438-456+|IPR036329+148-481+|IPR036951+42-482+|IPR041912+149-454+|IPR045865+51-154+
|
— |
PF00351+149-478+Biopterin-dependent_aromatic_amino_acid_hydroxylase|PF01842+56-116+ACT_domain
|
G3DSA:1.10.800.10:FF:000004+43-482+Tyrosine_3-monooxygenase
|
PTHR11473+18-485+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29;487-489
|
1.000
|
30-486
|
2pah_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
55876.020
|
5.278
|
-8.500
|
27.198
|
13.497
|
48.671
|
51.329
|
13.292
|
13.906
|
47.035
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
2798.061
|
1742.139
|
3239.140
|
3254.787
|
4518.401
|
4952.454
|
2147.452
|
9539.289
|
81.358
|
1157.875
|
696.510
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
0.764
|
— |
0.441
|
— |
-1.196
|
0.832
|
-2.005
|
-4.002
|
5.512
|
3.166
|
— | — |
No JSON data available for plots.