Hg_chrom6_TN10mRNA_13095
Organism: Heterodera glycines Gene Locus: chr6:11790376-11794947 Feature type: polypeptideProtein Sequence
Length: 406
(Signal peptide: 1-60)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.718 | 1.146 | 0.717 | 0.679 | 0.616 | 2.274 | 0.997 | 0.493 | 0.383 | 0.533 | 0.411 | 1.449 | 0.616 | 2.226 | 0.804 | 1.619 | 0.808 | 0.672 | 1.137 | 0.507 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12337
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-60
|
0.705
|
0.535
|
0.000
|
0.000
|
0.138
|
0.270
|
0.109
|
0.234
|
0.080
|
0.019
|
0.097
|
0.042
|
0.135
|
0.964
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010887
|
1.000
|
1.000
|
Hsc_gene_6243.t1
|
Hsc_gene_6243.t1
|
— |
Q10014.2 Uncharacterized protein T25E4.1 [Caenorhabditis elegans]
|
CAD5211772.1 unnamed protein product [Bursaphelenchus okinawaensis];CAG9094323.1 unnamed protein product [Bursaphelenchus okinawaensis]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.953|GO:0005575_0.917|GO:0110165_0.916|GO:0009987_0.888|GO:0065007_0.884|GO:0050789_0.871|GO:0050794_0.861|GO:0050896_0.815|GO:0051716_0.773|GO:0005622_0.763|GO:0023052_0.745|GO:0007154_0.741|GO:0007165_0.724|GO:0006950_0.722|GO:0033554_0.691|GO:0035556_0.685|GO:0006986_0.670|GO:0030968_0.670|GO:0034620_0.670|GO:0034976_0.670|GO:0035966_0.670|GO:0035967_0.670
|
IPR035231+239-322+
|
— |
PF17281+239-322+Family_of_unknown_function_(DUF5346)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-406
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.953
|
42053.290
|
5.719
|
-2.000
|
15.271
|
6.404
|
45.320
|
54.680
|
7.635
|
7.635
|
66.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
426.207
|
281.613
|
42.768
|
46.541
|
107.525
|
246.460
|
90.513
|
140.289
|
12.387
|
1496.975
|
860.723
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.950
|
-2.734
|
— |
1.177
|
1.211
|
-1.435
|
-0.923
|
-0.488
|
-7.029
|
— |
-3.410
|
— | — |