Hg_chrom6_TN10mRNA_13097
Organism: Heterodera glycines Gene Locus: chr6:11816104-11817475 Feature type: polypeptideProtein Sequence
Length: 111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.629 | 1.467 | 0.983 | 0.0 | 0.751 | 2.31 | 0.751 | 2.252 | 0.801 | 1.704 | 0.956 | 1.59 | 1.251 | 1.04 | 0.368 | 0.772 | 0.443 | 1.502 | 0.693 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12339
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.378
|
0.202
|
0.054
|
0.484
|
0.184
|
0.467
|
0.267
|
0.009
|
0.361
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010888
|
1.000
|
1.000
|
Hsc_gene_6240.t1
|
Hsc_gene_6240.t1
|
— |
P49809.1 Regulator of G-protein signaling egl-10 [Caenorhabditis elegans]
|
KAI1709850.1 regulator of G protein signaling domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008277|GO:0035556
|
GO:0008150_0.911|GO:0009987_0.862|GO:0005575_0.858|GO:0110165_0.806|GO:0065007_0.803|GO:0050789_0.793|GO:0050794_0.775|GO:0050896_0.771|GO:0051716_0.740|GO:0005622_0.712|GO:0023052_0.710|GO:0007154_0.705|GO:0007165_0.703|GO:0016020_0.695|GO:0007186_0.638|GO:0005737_0.614|GO:0003674_0.560|GO:0005886_0.539|GO:0071944_0.539|GO:0005488_0.524
|
IPR000591+45-111_48-109+|IPR036388+17-111+|IPR036390+27-107+|IPR047016+22-111+
|
SM00049+45-111+
|
PF00610+48-109+Domain_found_in_Dishevelled,_Egl-10,_and_Pleckstrin_(DEP)
|
— |
PTHR45746+22-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-23
|
1.000
|
24-111
|
7ewr_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.618
|
12496.310
|
6.641
|
0.500
|
22.523
|
12.613
|
45.946
|
54.054
|
12.613
|
9.910
|
46.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
21.544
|
66.582
|
51.153
|
18.447
|
7.238
|
13.792
|
9.726
|
21.201
|
18.253
|
10.014
|
13.545
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.611
|
-1.990
|
-1.363
|
-1.378
|
0.943
|
— | — |
-0.982
|
— | — | — | — | — |
No JSON data available for plots.