SCN Proteipedia

Hg_chrom6_TN10mRNA_13100

Organism: Heterodera glycines Gene Locus: chr6:11828437-11839048 Feature type: polypeptide

Protein Sequence

Length: 925

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.106	1.006	0.885	0.671	0.721	1.053	0.721	1.297	0.577	0.92	0.737	1.145	0.901	0.977	1.721	1.622	1.453	0.868	0.832	0.668	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12342	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KKKSSLSTMNSRKASRK,RKWEFVFMQAEAQYKVDKK,TRAANRPSARRQAGGGPARAERTGRNGRAKARGADGTDRRR	—	—	—	—	—	—	0.000	—	—	0.320	0.136	0.082	0.489	0.131	0.052	0.080	0.086	0.303	0.147

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004476	1.000	2.000	Hsc_gene_6239.t1;Hsc_gene_6239.t2	Hsc_gene_6240.t1	—	P49809.1 Regulator of G-protein signaling egl-10 [Caenorhabditis elegans]	KAI1712453.1 regulator of G protein signaling domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0007186\|GO:0008277\|GO:0035556	GO:0008150_0.935\|GO:0009987_0.876\|GO:0065007_0.870\|GO:0050789_0.860\|GO:0050794_0.844\|GO:0005575_0.842\|GO:0110165_0.818\|GO:0050896_0.792\|GO:0051716_0.751\|GO:0007154_0.729\|GO:0023052_0.727\|GO:0007165_0.709\|GO:0016020_0.688\|GO:0007186_0.629\|GO:0071944_0.625\|GO:0003674_0.602\|GO:0005886_0.594\|GO:0005622_0.584\|GO:0005488_0.525	IPR000591+45-120_48-118+\|IPR015898+345-414_346-407+\|IPR016137+430-451_433-547_433-549_452-470_480-503_523-542+\|IPR036284+347-400+\|IPR036305+423-550+\|IPR036388+17-125+\|IPR036390+30-136+\|IPR040759+121-221+\|IPR044926+401-554+\|IPR047016+24-577+\|IPR047017+126-228+	SM00049+45-120+\|SM00224+346-407+\|SM00315+433-549+	PF00610+48-118+Domain_found_in_Dishevelled,_Egl-10,_and_Pleckstrin_(DEP)\|PF00615+433-547+Regulator_of_G_protein_signaling_domain\|PF00631+345-414+GGL_domain\|PF18148+121-221+Regulator_of_G-protein_signalling_DHEX_domain	G3DSA:1.10.10.10:FF:000162+17-125+Regulator_of_G-protein_signaling_6\|G3DSA:1.10.1240.60:FF:000001+126-228+Regulator_of_G-protein_signaling_6	PTHR45746+24-577+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-23;230-358;616-925	2.000	24-229;359-615	6n9g_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.900	101505.730	10.140	50.000	25.081	9.189	53.730	46.270	15.892	9.189	57.730

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1290.740	2425.936	2021.696	796.649	316.910	570.239	248.272	994.416	1063.431	2084.119	1646.682

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.493	-1.744	-1.234	-1.361	0.862	-1.191	0.701	-1.862	—	—	—	—	—

No JSON data available for plots.

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