Hg_chrom6_TN10mRNA_13103
Organism: Heterodera glycines Gene Locus: chr6:11851666-11862610 Feature type: polypeptideProtein Sequence
Length: 625
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.614 | 0.819 | 0.931 | 0.331 | 1.147 | 0.779 | 0.819 | 1.12 | 1.138 | 1.211 | 0.921 | 1.129 | 1.556 | 0.862 | 1.698 | 1.006 | 1.311 | 0.921 | 0.862 | 0.988 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12345
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
plastid
|
— |
RKGGRRQRRR
|
51-87
|
0.991
|
38-87
|
0.993
|
— | — |
0.000
|
— | — |
0.218
|
0.171
|
0.500
|
0.305
|
0.287
|
0.142
|
0.235
|
0.356
|
0.237
|
0.413
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010890
|
1.000
|
1.000
|
Hsc_gene_6236.t1
|
Hsc_gene_6236.t1
|
— |
Q27464.1 Glucose-6-phosphate 1-dehydrogenase [Caenorhabditis elegans]
|
KAI1733116.1 glucose-6-phosphate dehydrogenase, NAD binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004345|GO:0006006|GO:0016614|GO:0050661
|
GO:0003674_0.791|GO:0008150_0.761|GO:0005575_0.709|GO:0110165_0.709|GO:0009987_0.700|GO:0003824_0.674|GO:0008152_0.602|GO:0005622_0.590|GO:0016491_0.587|GO:0044238_0.584|GO:0044237_0.574|GO:0016614_0.572|GO:0016616_0.572|GO:0004345_0.550|GO:0005737_0.543|GO:0006139_0.521|GO:0044281_0.511|GO:0006793_0.510|GO:0006796_0.510|GO:1901135_0.509
|
IPR001282+127-612_128-607_128-614_267-280_291-319_343-360_361-377_450-476+|IPR019796+301-307+|IPR022674+132-311+|IPR022675+314-604+|IPR036291+128-312+
|
— |
PF00479+132-311+Glucose-6-phosphate_dehydrogenase,_NAD_binding_domain|PF02781+314-604+Glucose-6-phosphate_dehydrogenase,_C-terminal_domain
|
G3DSA:3.40.50.720:FF:000111+131-312+Glucose-6-phosphate_1-dehydrogenase
|
PTHR23429+127-612+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-41
|
1.000
|
42-625
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
71314.300
|
9.671
|
22.000
|
28.640
|
12.320
|
50.240
|
49.760
|
16.640
|
12.000
|
47.360
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
2010.893
|
840.088
|
1932.544
|
3017.541
|
4493.661
|
3340.432
|
3432.445
|
1637.262
|
585.529
|
1348.272
|
1021.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
1.708
|
0.751
|
0.543
|
-0.413
|
— |
-1.134
|
1.210
|
-1.301
|
2.507
|
1.946
|
— | — |
No JSON data available for plots.