Hg_chrom6_TN10mRNA_13104
Organism: Heterodera glycines Gene Locus: chr6:11864286-11877403 Feature type: polypeptideProtein Sequence
Length: 1,085
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.286 | 1.2 | 0.754 | 0.667 | 0.661 | 1.749 | 0.966 | 2.396 | 0.717 | 0.971 | 0.614 | 1.41 | 0.87 | 1.471 | 0.677 | 1.08 | 0.997 | 0.782 | 0.709 | 0.976 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12346
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.728
|
0.233
|
0.012
|
0.474
|
0.067
|
0.106
|
0.110
|
0.016
|
0.150
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010891
|
1.000
|
1.000
|
Hsc_gene_6235.t1
|
— | — |
V6CLJ5.1 Suppressor of hairless protein homolog [Caenorhabditis elegans]
|
XP_020305851.1 CBR-LAG-1 protein [Loa loa];EJD74961.1 CBR-LAG-1 protein [Loa loa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000978|GO:0001228|GO:0003677|GO:0003700|GO:0005634|GO:0006355|GO:0006357
|
GO:0008150_0.964|GO:0009987_0.905|GO:0003674_0.901|GO:0065007_0.885|GO:0050789_0.877|GO:0050794_0.863|GO:0005488_0.850|GO:0005575_0.823|GO:0110165_0.823|GO:0008152_0.822|GO:0044238_0.813|GO:0043170_0.801|GO:0009058_0.797|GO:0044237_0.792|GO:0019222_0.787|GO:0031323_0.787|GO:0080090_0.778|GO:0060255_0.775|GO:0044249_0.772|GO:0009059_0.765|GO:0006139_0.764|GO:0009889_0.764|GO:0031326_0.764|GO:0010467_0.763|GO:0010468_0.759|GO:0010556_0.759|GO:0097159_0.755|GO:0034654_0.753|GO:0016070_0.752|GO:0090304_0.752|GO:0032774_0.743|GO:0141187_0.743|GO:0005622_0.740|GO:0019219_0.738|GO:0051252_0.738|GO:0003676_0.734|GO:0006351_0.728|GO:0006355_0.727|GO:2001141_0.727|GO:0016020_0.725|GO:0048518_0.699|GO:0048522_0.698|GO:0003677_0.696|GO:0043565_0.696|GO:0003690_0.693|GO:1990837_0.693|GO:0000976_0.684|GO:0001067_0.684|GO:0043226_0.683|GO:0050896_0.668|GO:0043229_0.667|GO:0009893_0.655|GO:0010604_0.654|GO:0031325_0.648|GO:0009891_0.644|GO:0031328_0.640|GO:0043227_0.638|GO:0010557_0.637|GO:0051716_0.635|GO:0045935_0.629|GO:0006357_0.627|GO:0006366_0.627|GO:0051254_0.626|GO:0043231_0.625|GO:0032502_0.621|GO:0048856_0.621|GO:0045893_0.616|GO:1902680_0.616|GO:0032501_0.611|GO:0007154_0.609|GO:0045944_0.609|GO:0023052_0.600|GO:0007165_0.588|GO:0000977_0.587|GO:0007275_0.585|GO:0005634_0.577|GO:0043228_0.556|GO:0043232_0.556|GO:0140110_0.553|GO:0048519_0.544|GO:0003700_0.540|GO:0048523_0.539|GO:0048513_0.538|GO:0032991_0.503
|
IPR008967+510-701+|IPR013783+920-1023+|IPR014756+898-1019+|IPR015350+707-875_748-875+|IPR015351+529-703_532-703+|IPR036358+705-880+|IPR037095+516-904+|IPR038007+922-1019+|IPR040159+440-1022+
|
SM01267+529-703+|SM01268+707-875+
|
PF09270+748-875+Beta-trefoil_DNA-binding_domain|PF09271+532-703+LAG1,_DNA_binding|PF20144+922-1019+TIG_domain
|
— |
PTHR10665+440-1022+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-314;414-487
|
3.000
|
1-35;315-413;488-1085
|
3brf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
117094.090
|
7.166
|
18.000
|
20.276
|
12.166
|
45.899
|
54.101
|
12.166
|
8.111
|
56.866
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1081.797
|
181.643
|
338.146
|
135.963
|
63.893
|
59.456
|
138.310
|
126.657
|
107.606
|
4260.633
|
2480.764
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
-0.555
|
-1.205
|
-1.121
|
— |
1.226
|
0.987
|
— |
-3.668
|
— |
-4.155
|
— | — |
No JSON data available for plots.