Hg_chrom6_TN10mRNA_13105
Organism: Heterodera glycines Gene Locus: chr6:11884708-11889216 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.695 | 0.758 | 1.285 | 0.843 | 1.042 | 1.115 | 0.938 | 0.815 | 0.725 | 1.212 | 0.947 | 1.439 | 0.83 | 0.993 | 1.442 | 0.738 | 0.713 | 1.523 | 1.254 | 1.119 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12347
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
RKKK,RKNEKMEPIKELRKYRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.156
|
0.730
|
0.084
|
0.332
|
0.424
|
0.096
|
0.103
|
0.363
|
0.148
|
0.184
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004477
|
1.000
|
2.000
|
Hsc_gene_6232.t1;Hsc_gene_6232.t2
|
Hsc_gene_6232.t1
|
— |
Q9CW42.2 Mitochondrial amidoxime-reducing component 1 [Mus musculus]
|
KAH7723433.1 Protein F56A11.5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0030151|GO:0030170
|
GO:0008150_0.708|GO:0005575_0.672|GO:0110165_0.667|GO:0009987_0.630|GO:0003674_0.587|GO:0005622_0.557|GO:0008152_0.552|GO:0005737_0.533|GO:0044237_0.531|GO:0016020_0.525|GO:0003824_0.502
|
IPR005302+203-362_232-359+|IPR005303+48-170+|IPR011037+48-361+|IPR052716+41-368+
|
— |
PF03473+232-359+MOSC_domain|PF03476+48-170+MOSC_N-terminal_beta_barrel_domain
|
— |
PTHR36930+41-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-368
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
41456.410
|
7.270
|
3.000
|
28.261
|
10.054
|
45.380
|
54.620
|
14.946
|
13.315
|
51.359
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
1569.296
|
196.451
|
1656.861
|
1411.693
|
2259.802
|
3063.677
|
2218.081
|
3198.602
|
203.458
|
1461.141
|
922.134
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.847
|
2.708
|
-0.123
|
0.647
|
0.454
|
-0.455
|
— |
-0.386
|
-2.961
|
— | — | — | — |
No JSON data available for plots.