Hg_chrom6_TN10mRNA_13106
Organism: Heterodera glycines Gene Locus: chr6:11889480-11894123 Feature type: polypeptideProtein Sequence
Length: 513
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.315 | 0.771 | 0.567 | 0.538 | 0.78 | 0.9 | 0.743 | 1.072 | 1.516 | 1.475 | 1.004 | 1.491 | 1.787 | 0.75 | 0.756 | 0.919 | 0.927 | 0.857 | 1.799 | 0.917 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12348
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.311
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
GTKKESKKAK,RKELIETSITTREAKK,RRNVPWLLVMKRGKREMK,KRGKREMKEGQLERAAKK
|
46-71
|
0.789
|
— | — | — | — |
0.000
|
— | — |
0.126
|
0.080
|
0.022
|
0.101
|
0.856
|
0.341
|
0.429
|
0.001
|
0.273
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010892
|
1.000
|
1.000
|
Hsc_gene_6231.t1
|
Hsc_gene_6231.t1
|
— |
P49049.1 Intramembrane protease 2 [Caenorhabditis elegans]
|
KAH7721869.1 peptidase A22B family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0042500
|
GO:0005575_0.829|GO:0110165_0.829|GO:0016020_0.783|GO:0071944_0.750|GO:0005886_0.739|GO:0008150_0.722|GO:0005622_0.678|GO:0043226_0.678|GO:0005737_0.662|GO:0043229_0.653|GO:0043227_0.635|GO:0043231_0.614|GO:0003674_0.575|GO:0005773_0.560|GO:0012505_0.538
|
IPR006639+63-457+|IPR007369+23-483_64-469+
|
SM00730+63-457+
|
PF04258+64-469+Signal_peptide_peptidase
|
— |
PTHR12174+23-483+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14;476-513
|
1.000
|
15-475
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
57139.720
|
9.490
|
18.500
|
20.273
|
14.035
|
39.181
|
60.819
|
12.476
|
7.797
|
47.173
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgreen
|
8761.996
|
2967.960
|
7919.176
|
7447.209
|
7549.617
|
8782.162
|
3737.546
|
3898.303
|
26951.631
|
2256.770
|
12840.282
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.187
|
1.190
|
— | — |
0.233
|
-1.224
|
-1.274
|
— |
3.470
|
-1.692
|
1.992
|
— | — |
No JSON data available for plots.