Hg_chrom6_TN10mRNA_13108
Organism: Heterodera glycines Gene Locus: chr6:11902732-11906719 Feature type: polypeptideProtein Sequence
Length: 383
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.729 | 1.336 | 0.854 | 0.81 | 1.48 | 0.937 | 0.591 | 1.305 | 0.986 | 0.529 | 1.068 | 1.229 | 1.233 | 1.004 | 1.119 | 1.455 | 1.07 | 0.633 | 2.209 | 1.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12350
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RFQKRRW,RREEFLEIELKKVRE,KKVREELAEYKRREM,KRREMCAITTPKKKGI,RREMCAITTPKKKGILKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.828
|
0.163
|
0.008
|
0.384
|
0.065
|
0.073
|
0.075
|
0.010
|
0.063
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004478
|
1.000
|
2.000
|
Hsc_gene_6229.t1;Hsc_gene_6229.t2
|
Hsc_gene_6229.t1;Hsc_gene_6229.t2
|
— |
P05205.2 Heterochromatin protein 1 [Drosophila melanogaster]
|
XP_035680566.1 testis-specific chromodomain protein Y 2-like [Branchiostoma floridae]
|
No
|
-0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.836|GO:0005575_0.814|GO:0110165_0.813|GO:0005622_0.770|GO:0043226_0.727|GO:0043229_0.713|GO:0003674_0.687|GO:0016020_0.643|GO:0005488_0.630|GO:0043227_0.608|GO:0009987_0.595|GO:0043231_0.584|GO:0032502_0.574|GO:0065007_0.566|GO:0050789_0.558|GO:0005634_0.550|GO:0050794_0.538|GO:0008152_0.528|GO:0044238_0.517|GO:0043170_0.505|GO:0044237_0.501
|
IPR000953+315-370_316-377+|IPR016197+247-296_310-370+|IPR023779+333-353+|IPR023780+316-368+
|
SM00298+315-370+
|
PF00385+316-368+Chromo_(CHRromatin_Organisation_MOdifier)_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
376-383
|
1.000
|
1-375
|
4hae_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
44060.940
|
6.652
|
1.000
|
28.721
|
14.360
|
54.830
|
45.170
|
15.144
|
13.577
|
50.131
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
747.970
|
334.951
|
407.840
|
437.457
|
789.302
|
548.349
|
1077.570
|
418.103
|
362.851
|
1495.139
|
1009.873
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.248
|
0.211
|
0.820
|
-0.511
|
0.984
|
-0.496
|
1.507
|
— | — | — | — | — |
No JSON data available for plots.