Hg_chrom6_TN10mRNA_13109
Organism: Heterodera glycines Gene Locus: chr6:11908268-11911419 Feature type: polypeptideProtein Sequence
Length: 208
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.503 | 0.671 | 1.486 | 0.497 | 2.003 | 1.356 | 0.63 | 0.721 | 0.641 | 0.975 | 1.603 | 1.414 | 0.935 | 0.462 | 1.57 | 0.481 | 0.867 | 1.457 | 1.479 | 0.707 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12351
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKQTEAETERREREK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.553
|
0.060
|
0.009
|
0.302
|
0.063
|
0.129
|
0.109
|
0.003
|
0.142
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010894
|
1.000
|
1.000
|
Hsc_gene_6228.t1
|
Hsc_gene_6228.t1
|
— |
Q6GLE1.1 Coiled-coil domain-containing protein 25 [Xenopus tropicalis]
|
KAF7638799.1 NFACT-R_1 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.922|GO:0110165_0.913|GO:0005622_0.892|GO:0005737_0.777|GO:0008150_0.679|GO:0043226_0.647|GO:0009987_0.643|GO:0016020_0.636|GO:0043229_0.624|GO:0003674_0.613|GO:0005488_0.607|GO:0065007_0.596|GO:0050789_0.584|GO:0043227_0.564|GO:0050794_0.556|GO:0043231_0.540|GO:0005886_0.508|GO:0071944_0.508
|
IPR008532+1-111+|IPR039730+1-208+
|
— |
PF05670+1-111+NFACT_protein_RNA_binding_domain
|
— |
PTHR13049+1-208+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
144-208
|
1.000
|
1-143
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
24416.640
|
5.528
|
-2.500
|
39.904
|
9.135
|
56.731
|
43.269
|
19.712
|
20.192
|
42.788
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1568.317
|
742.530
|
1315.543
|
1275.685
|
1234.866
|
1055.670
|
1259.569
|
868.423
|
3699.544
|
1179.620
|
2259.587
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
0.644
|
— | — |
-0.211
|
0.266
|
-0.389
|
0.680
|
— | — | — | — | — |
No JSON data available for plots.