Hg_chrom6_TN10mRNA_13110
Organism: Heterodera glycines Gene Locus: chr6:11911567-11912586 Feature type: polypeptideProtein Sequence
Length: 101
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 0.921 | 0.72 | 0.683 | 1.485 | 1.269 | 0.589 | 0.99 | 1.98 | 0.803 | 1.2 | 2.33 | 0.55 | 0.571 | 1.819 | 0.849 | 0.974 | 1.05 | 0.762 | 0.582 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12352
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.606
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.180
|
0.974
|
0.010
|
0.048
|
0.003
|
0.026
|
0.006
|
0.004
|
0.119
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010895
|
1.000
|
1.000
|
Hsc_gene_6227.t1
|
Hsc_gene_6227.t1
|
— |
Q0MQ92.3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Gorilla gorilla gorilla]
|
KAH7712295.1 NADH-ubiquinone oxidoreductase B8 subunit [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.925|GO:0110165_0.922|GO:0005622_0.839|GO:0016020_0.811|GO:0043226_0.804|GO:0043229_0.792|GO:0005737_0.788|GO:0043227_0.738|GO:0043231_0.730|GO:0005739_0.573|GO:0008150_0.543
|
IPR007741+21-94_29-79+|IPR016464+1-101_10-94+|IPR036249+12-93+
|
SM00916+21-94+
|
PF05047+29-79+Mitochondrial_ribosomal_protein_L51_/_S25_/_CI-B8_domain
|
— |
PTHR12878+10-94+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-101
|
8q4a_S
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
11575.390
|
9.681
|
5.000
|
31.683
|
6.931
|
52.475
|
47.525
|
18.812
|
12.871
|
43.564
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
520.447
|
227.645
|
297.983
|
306.229
|
475.725
|
395.657
|
419.564
|
341.015
|
281.579
|
1141.839
|
773.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.291
|
0.148
|
0.604
|
-0.252
|
— |
-0.316
|
0.441
|
— | — | — | — | — |
No JSON data available for plots.