Hg_chrom6_TN10mRNA_13112
Organism: Heterodera glycines Gene Locus: chr6:11916810-11917399 Feature type: polypeptideProtein Sequence
Length: 80
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.163 | 1.591 | 0.862 | 0.833 | 0.641 | 0.595 | 1.25 | 0.556 | 1.351 | 1.515 | 1.471 | 0.694 | 0.0 | 1.02 | 0.357 | 0.615 | 1.894 | 0.0 | 2.206 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12354
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKTVAEYAGDYVDKVLRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.823
|
0.196
|
0.022
|
0.299
|
0.165
|
0.086
|
0.045
|
0.000
|
0.107
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010897
|
1.000
|
1.000
|
Hsc_gene_6223.t1
|
Hsc_gene_6223.t1
|
— | — |
KAF7638393.1 TPR_REGION domain-containing protein [Meloidogyne graminicola]
|
WEW54851
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005669|GO:0006352|GO:0046982
|
GO:0005575_0.903|GO:0110165_0.898|GO:0005622_0.794|GO:0016020_0.749|GO:0043226_0.734|GO:0043229_0.726|GO:0043227_0.689|GO:0043231_0.689|GO:0005634_0.593|GO:0003674_0.574|GO:0005488_0.547
|
IPR003228+18-78+|IPR009072+7-80_11-77+
|
— |
PF03847+18-78+Transcription_initiation_factor_TFIID_subunit_A
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-80
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.572
|
9116.500
|
7.841
|
2.000
|
31.250
|
12.500
|
45.000
|
55.000
|
17.500
|
13.750
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
201.945
|
130.051
|
177.236
|
200.433
|
225.065
|
235.589
|
590.487
|
257.406
|
20.078
|
187.349
|
115.661
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.217
|
0.487
|
0.287
|
— | — |
1.337
|
— |
1.342
|
— | — | — | — | — |
No JSON data available for plots.