Hg_chrom6_TN10mRNA_13113
Organism: Heterodera glycines Gene Locus: chr6:11917865-11924264 Feature type: polypeptideProtein Sequence
Length: 605
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.096 | 1.038 | 1.082 | 0.57 | 1.35 | 1.738 | 0.63 | 1.983 | 0.735 | 1.206 | 0.826 | 1.264 | 1.102 | 0.826 | 1.383 | 0.921 | 0.867 | 0.801 | 0.509 | 0.535 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12355
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.891
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRFLAFQNAAATRRPKK.
|
— | — | — | — | — | — |
0.000
|
— | — |
0.869
|
0.126
|
0.020
|
0.241
|
0.036
|
0.236
|
0.148
|
0.047
|
0.069
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010898
|
1.000
|
1.000
|
Hsc_gene_6222.t1
|
Hsc_gene_6222.t1
|
— |
Q960E8.1 General transcription factor IIH subunit 1 [Drosophila melanogaster]
|
KAF7634948.1 BSD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000439|GO:0006289|GO:0006351
|
GO:0008150_0.946|GO:0005575_0.909|GO:0110165_0.901|GO:0005622_0.852|GO:0016020_0.808|GO:0043226_0.786|GO:0043229_0.765|GO:0043227_0.732|GO:0043231_0.704|GO:0005634_0.657|GO:0050896_0.582|GO:0032991_0.502
|
IPR005607+124-178_210-262_212-265+|IPR011993+6-122+|IPR013876+29-112+|IPR027079+12-596+|IPR035925+131-171_200-270_211-263+
|
SM00751+124-178_210-262+
|
PF03909+212-265+BSD_domain|PF08567+29-112+TFIIH_p62_subunit,_N-terminal_domain
|
— |
PTHR12856+12-596+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28;354-426
|
2.000
|
29-353;427-605
|
8ebt_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
68135.400
|
6.573
|
1.000
|
30.248
|
10.413
|
53.223
|
46.777
|
16.198
|
14.050
|
48.099
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
848.012
|
1039.582
|
461.212
|
435.901
|
435.242
|
409.817
|
627.608
|
362.947
|
177.283
|
2162.473
|
1311.677
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.402
|
-1.391
|
— | — | — |
0.625
|
— |
0.932
|
-3.717
|
— | — | — | — |
No JSON data available for plots.