Hg_chrom6_TN10mRNA_13114
Organism: Heterodera glycines Gene Locus: chr6:11924644-11930127 Feature type: polypeptideProtein Sequence
Length: 551
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.161 | 0.971 | 1.188 | 0.814 | 0.968 | 1.303 | 0.778 | 1.18 | 0.726 | 1.128 | 0.385 | 1.388 | 1.462 | 1.256 | 1.63 | 0.933 | 0.863 | 0.825 | 0.698 | 0.801 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12356
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
9-29
|
0.996
|
4-44
|
0.990
|
— | — |
0.000
|
— | — |
0.070
|
0.970
|
0.009
|
0.247
|
0.043
|
0.039
|
0.111
|
0.007
|
0.039
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010899
|
1.000
|
1.000
|
Hsc_gene_6221.t1
|
Hsc_gene_6221.t1
|
— |
Q9N0F3.1 Serine--tRNA ligase, mitochondrial [Bos taurus]
|
EFO92942.1 CRE-SARS-1 protein [Caenorhabditis remanei]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0004828|GO:0005524|GO:0006418|GO:0006434
|
GO:0005575_0.817|GO:0110165_0.817|GO:0005622_0.706|GO:0005737_0.630|GO:0016020_0.593|GO:0008150_0.564|GO:0043226_0.556|GO:0043229_0.544|GO:0003674_0.501
|
IPR002314+327-511+|IPR002317+115-532_379-392_419-432_436-452_454-470+|IPR006195+298-522+|IPR045864+147-534_202-530+
|
— |
PF00587+327-511+tRNA_synthetase_class_II_core_domain_(G,_H,_P,_S_and_T)
|
— |
PTHR11778+115-532+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-551
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
61390.050
|
6.067
|
-3.500
|
25.227
|
11.252
|
46.279
|
53.721
|
12.886
|
12.341
|
53.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
greenyellow
|
708.055
|
744.253
|
728.867
|
724.393
|
801.499
|
661.115
|
1089.188
|
478.735
|
382.214
|
850.562
|
649.841
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.260
|
-0.176
|
— | — |
-0.263
|
0.731
|
-0.570
|
1.329
|
— | — | — | — | — |
No JSON data available for plots.