Hg_chrom6_TN10mRNA_13117
Organism: Heterodera glycines Gene Locus: chr6:11945319-11947606 Feature type: polypeptideProtein Sequence
Length: 191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.913 | 1.339 | 1.047 | 0.542 | 1.222 | 0.94 | 0.748 | 1.571 | 0.931 | 1.203 | 1.111 | 2.772 | 0.727 | 0.705 | 1.389 | 0.598 | 0.687 | 0.714 | 0.403 | 2.002 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12359
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKGKGRGGGAGGETKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.698
|
0.263
|
0.026
|
0.550
|
0.257
|
0.096
|
0.135
|
0.013
|
0.063
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004479
|
2.000
|
1.000
|
Hsc_gene_6218.t1
|
Hsc_gene_6218.t1
|
— |
O61219.1 N-alpha-acetyltransferase daf-31 [Caenorhabditis elegans]
|
KAI3408122.1 N-alpha-acetyltransferase daf-31 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004596|GO:0006474|GO:0016747|GO:0031415
|
GO:0005575_0.785|GO:0110165_0.779|GO:0005622_0.740|GO:0008150_0.729|GO:0003674_0.728|GO:0005737_0.671|GO:0003824_0.556|GO:0016020_0.539|GO:0043226_0.527|GO:0043229_0.519|GO:0009987_0.510
|
IPR000182+1-153_19-127+|IPR016181+1-156+|IPR045047+1-158+
|
— |
PF00583+19-127+Acetyltransferase_(GNAT)_family
|
G3DSA:3.40.630.30:FF:000101+1-180+N-alpha-acetyltransferase_10
|
PTHR23091+1-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
162-191
|
1.000
|
1-161
|
9qqb_XB
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
22082.190
|
8.233
|
5.000
|
30.366
|
13.089
|
48.168
|
51.832
|
17.277
|
13.089
|
43.979
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
950.156
|
1393.418
|
768.608
|
989.977
|
1032.010
|
1032.937
|
751.617
|
613.341
|
739.153
|
1134.352
|
964.981
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.087
|
-0.630
|
0.473
|
— | — |
-0.449
|
-0.858
|
0.435
|
— | — | — | — | — |
No JSON data available for plots.