Hg_chrom6_TN10mRNA_13118
Organism: Heterodera glycines Gene Locus: chr6:11945319-11947606 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.445 | 1.027 | 0.584 | 1.224 | 1.014 | 0.807 | 1.412 | 0.879 | 1.145 | 1.113 | 2.991 | 0.785 | 0.652 | 1.499 | 0.484 | 0.648 | 0.77 | 0.0 | 1.994 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12359
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKGKGRGGGAGGETKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.650
|
0.161
|
0.010
|
0.562
|
0.293
|
0.079
|
0.183
|
0.007
|
0.043
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004479
|
2.000
|
1.000
|
Hsc_gene_6218.t1
|
— | — |
O61219.1 N-alpha-acetyltransferase daf-31 [Caenorhabditis elegans]
|
KAI3408122.1 N-alpha-acetyltransferase daf-31 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004596|GO:0006474|GO:0016747|GO:0031415
|
GO:0005575_0.778|GO:0110165_0.771|GO:0005622_0.732|GO:0003674_0.727|GO:0008150_0.718|GO:0005737_0.661|GO:0003824_0.552|GO:0016020_0.541|GO:0043226_0.529|GO:0043229_0.524
|
IPR000182+1-139_33-113+|IPR016181+1-138+|IPR045047+1-144+
|
— |
PF00583+33-113+Acetyltransferase_(GNAT)_family
|
— |
PTHR23091+1-144+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
148-177
|
1.000
|
1-147
|
9qqb_XB
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
20440.340
|
8.597
|
5.500
|
30.508
|
12.429
|
48.023
|
51.977
|
17.514
|
12.994
|
44.068
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
950.156
|
1393.418
|
768.608
|
989.977
|
1032.010
|
1032.937
|
751.617
|
613.341
|
739.153
|
1134.352
|
964.981
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.087
|
-0.630
|
0.473
|
— | — |
-0.449
|
-0.858
|
0.435
|
— | — | — | — | — |
No JSON data available for plots.