Hg_chrom6_TN10mRNA_13119
Organism: Heterodera glycines Gene Locus: chr6:11948387-11949389 Feature type: polypeptideProtein Sequence
Length: 89
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.915 | 0.523 | 1.226 | 0.775 | 1.498 | 0.864 | 1.204 | 1.685 | 0.999 | 1.215 | 1.702 | 1.322 | 1.873 | 0.432 | 0.229 | 0.482 | 0.737 | 0.851 | 1.729 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12360
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.891
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.449
|
0.221
|
0.008
|
0.658
|
0.104
|
0.091
|
0.067
|
0.002
|
0.290
|
0.209
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010902
|
1.000
|
1.000
|
Hsc_gene_6217.t1
|
Hsc_gene_6217.t1
|
— |
A8XAC6.1 Barrier-to-autointegration factor 1 [Caenorhabditis briggsae]
|
KAI3408119.1 Barrier-to-autointegration factor 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0005575_0.840|GO:0110165_0.830|GO:0005622_0.747|GO:0043226_0.690|GO:0043229_0.671|GO:0005737_0.628|GO:0016020_0.622|GO:0008150_0.612|GO:0043227_0.561|GO:0043231_0.555
|
IPR004122+1-87_1-88+|IPR036617+1-88_2-89+|IPR051387+2-83+
|
SM01023+1-88+
|
PF02961+1-87+Barrier_to_autointegration_factor
|
G3DSA:1.10.150.40:FF:000005+2-89+Barrier-to-autointegration_factor_1
|
PTHR47507+2-83+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-89
|
6usi_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
9978.410
|
5.614
|
-1.500
|
31.461
|
14.607
|
44.944
|
55.056
|
15.730
|
15.730
|
44.944
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
416.969
|
368.078
|
281.738
|
519.972
|
692.234
|
454.835
|
508.566
|
346.305
|
104.469
|
556.490
|
362.767
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.615
|
0.361
|
0.993
|
0.381
|
-0.591
|
— |
-0.492
|
0.695
|
— | — | — | — | — |
No JSON data available for plots.