Hg_chrom6_TN10mRNA_13126
Organism: Heterodera glycines Gene Locus: chr6:11988950-12007186 Feature type: polypeptideProtein Sequence
Length: 2,306
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 0.948 | 0.899 | 0.793 | 1.156 | 1.001 | 0.862 | 1.431 | 1.176 | 1.248 | 0.69 | 1.403 | 1.18 | 0.934 | 1.283 | 0.774 | 0.917 | 1.17 | 0.701 | 0.765 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12367
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRIR,KKTDGAGGGGKKRGV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.342
|
0.240
|
0.034
|
0.633
|
0.096
|
0.172
|
0.102
|
0.053
|
0.106
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010905
|
1.000
|
1.000
|
Hsc_gene_6208.t1
|
Hsc_gene_18383.t1;Hsc_gene_6208.t1;Hsc_gene_6209.t1
|
— |
Q18990.2 Multifunctional protein pyr-1 [Caenorhabditis elegans]
|
KAI3418674.1 CPSase_sm_chain protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004070|GO:0004088|GO:0005524|GO:0006207|GO:0006520|GO:0006541|GO:0016597|GO:0016743|GO:0016787|GO:0016810|GO:0016812|GO:0046872
|
GO:0008150_0.854|GO:0003674_0.733|GO:0009987_0.719|GO:0008152_0.678|GO:0003824_0.645|GO:0005575_0.631|GO:0110165_0.631|GO:0044238_0.616|GO:0044281_0.589|GO:0009058_0.556|GO:0044237_0.530|GO:0005622_0.513
|
IPR002082+1975-2302+|IPR002195+1761-1772+|IPR002474+11-156_15-154+|IPR005479+538-740_574-588_1096-1291_1134-1148_1263-1270+|IPR005480+825-961_828-918+|IPR005483+429-443_458-468_578-590_612-631_647-664_704-733_786-804+|IPR006130+2031-2038_2031-2050_2116-2127_2257-2266_2267-2290+|IPR006131+2136-2300+|IPR006132+1975-2129+|IPR006274+11-383_14-380+|IPR006275+416-1499+|IPR006680+1542-1819+|IPR011059+1777-1892+|IPR011607+1363-1525_1383-1487+|IPR011761+543-735_1101-1294+|IPR013815+1109-1180+|IPR016185+416-537_974-1097+|IPR017926+199-377+|IPR029062+165-381_171-383+|IPR032466+1544-1822+|IPR035686+197-376+|IPR036480+10-170_11-167+|IPR036897+802-968_812-966+|IPR036901+1971-2302_1976-2298_2116-2289+|IPR036914+1365-1501_1368-1511+
|
SM00851+1383-1487+|SM01096+825-961+|SM01097+11-156+
|
PF00117+199-377+Glutamine_amidotransferase_class-I|PF00185+2136-2300+Aspartate/ornithine_carbamoyltransferase,_Asp/Orn_binding_domain|PF00988+15-154+Carbamoyl-phosphate_synthase_small_chain,_CPSase_domain|PF01979+1542-1819+Amidohydrolase_family|PF02142+1383-1487+MGS-like_domain|PF02729+1975-2129+Aspartate/ornithine_carbamoyltransferase,_carbamoyl-P_binding_domain|PF02786+538-740_1096-1291+Carbamoyl-phosphate_synthase_L_chain,_ATP_binding_domain|PF02787+828-918+Carbamoyl-phosphate_synthetase_large_chain,_oligomerisation_domain
|
G3DSA:3.20.20.140:FF:000036+1538-1890+Carbamoyl-phosphate_synthase_large_chain|G3DSA:3.30.1490.20:FF:000001+1109-1180+Carbamoyl-phosphate_synthase_large_chain|G3DSA:3.30.470.20:FF:000001+530-809+Carbamoyl-phosphate_synthase_large_chain|G3DSA:3.30.470.20:FF:000026+1168-1359+Carbamoyl-phosphate_synthase_large_chain|G3DSA:3.40.50.1370:FF:000002+2116-2289+Aspartate_carbamoyltransferase_2|G3DSA:3.40.50.1380:FF:000005+1367-1514+CAD_protein-like_isoform_X1|G3DSA:3.40.50.20:FF:000001+412-526+Carbamoyl-phosphate_synthase_large_chain|G3DSA:3.40.50.20:FF:000002+971-1079+Carbamoyl-phosphate_synthase_large_chain
|
PTHR11405+419-1066+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1887-1966
|
2.000
|
1-1886;1967-2306
|
6w2j_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
256047.940
|
6.728
|
9.000
|
25.585
|
10.624
|
44.579
|
55.421
|
13.703
|
11.882
|
50.781
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
3526.617
|
10227.608
|
2647.808
|
4052.962
|
4627.231
|
3466.438
|
3856.117
|
1284.177
|
2321.923
|
2376.631
|
2353.185
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.179
|
-1.472
|
0.722
|
0.159
|
-0.402
|
0.164
|
-1.537
|
1.728
|
— | — | — | — | — |
No JSON data available for plots.