Hg_chrom6_TN10mRNA_13128
Organism: Heterodera glycines Gene Locus: chr6:12026562-12029195 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.9 | 2.492 | 0.866 | 0.411 | 2.083 | 1.526 | 0.213 | 0.744 | 1.323 | 1.689 | 1.218 | 1.401 | 0.661 | 0.401 | 1.093 | 0.808 | 0.585 | 0.541 | 0.229 | 0.613 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12369
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.691
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
4-28
|
0.989
|
— | — |
0.000
|
— | — |
0.419
|
0.108
|
0.010
|
0.717
|
0.040
|
0.099
|
0.265
|
0.019
|
0.104
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010907
|
1.000
|
1.000
|
Hsc_gene_6204.t1
|
Hsc_gene_6204.t1
|
— |
O75410.2 Transforming acidic coiled-coil-containing protein 1 [Homo sapiens]
|
KAI1733122.1 transforming acidic coiled-coil-containing protein (TACC) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007052
|
GO:0005575_0.920|GO:0005622_0.836|GO:0110165_0.836|GO:0008150_0.745|GO:0003674_0.731|GO:0005488_0.731|GO:0009987_0.702|GO:0005515_0.697|GO:0065007_0.664|GO:0050789_0.643|GO:0050794_0.631|GO:0005737_0.597|GO:0043226_0.560|GO:0043229_0.545|GO:0071840_0.525|GO:0016043_0.515
|
IPR007707+175-314+|IPR039915+177-315+
|
— |
PF05010+175-314+Transforming_acidic_coiled-coil-containing_protein_(TACC),_C-terminal
|
— |
PTHR13924+177-315+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;308-336
|
1.000
|
3-307
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
38821.770
|
4.843
|
-10.500
|
32.143
|
6.250
|
58.036
|
41.964
|
14.881
|
17.262
|
41.071
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
192.578
|
314.835
|
268.967
|
227.426
|
139.024
|
92.470
|
67.256
|
281.391
|
89.609
|
253.561
|
183.296
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.456
|
-0.606
|
— |
-0.743
|
-0.573
|
-0.452
|
1.507
|
-1.928
|
— | — | — | — |
8.337
|
No JSON data available for plots.