Hg_chrom6_TN10mRNA_13129
Organism: Heterodera glycines Gene Locus: chr6:12029327-12037586 Feature type: polypeptideProtein Sequence
Length: 1,410
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.577 | 0.924 | 1.032 | 0.611 | 2.388 | 1.618 | 0.785 | 1.241 | 0.741 | 0.949 | 1.365 | 1.794 | 0.709 | 1.091 | 1.447 | 0.983 | 0.651 | 0.548 | 0.382 | 0.355 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12370
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRPR,KKKQLENDEKRDKEK,KRGIDEEWRNLRNKHR,ELKRRADKHPLRRKDPL,KRDEHWRGDGRESDRRPSR,RRRDESRSSRDTSRERRRT,RRDESRSSRDTSRERRRTH,KKMQLDEEEKQQEEKEKKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.846
|
0.055
|
0.003
|
0.265
|
0.056
|
0.026
|
0.020
|
0.003
|
0.046
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010908
|
1.000
|
1.000
|
Hsc_gene_6203.t1
|
— | — | — |
KAI6216648.1 G-patch domain protein [Aphelenchoides fujianensis]
|
No
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0008270
|
GO:0008150_0.749|GO:0009987_0.736|GO:0065007_0.712|GO:0050789_0.702|GO:0003674_0.690|GO:0005488_0.690|GO:0050794_0.683|GO:0005575_0.612|GO:0110165_0.612|GO:0048518_0.602|GO:0005622_0.599|GO:0008152_0.589|GO:0043170_0.589|GO:0048519_0.584|GO:0019222_0.583|GO:0048522_0.582|GO:0009058_0.581|GO:0009059_0.581|GO:0010467_0.581|GO:0044237_0.581|GO:0044249_0.581|GO:0043226_0.577|GO:0031323_0.573|GO:0060255_0.573|GO:0048523_0.572|GO:0044238_0.566|GO:0080090_0.566|GO:0006139_0.564|GO:0090304_0.564|GO:0016020_0.560|GO:0016070_0.555|GO:0043229_0.555|GO:0034654_0.551|GO:0141187_0.551|GO:0097159_0.548|GO:0009889_0.546|GO:0010556_0.546|GO:0031326_0.546|GO:0010468_0.542|GO:0032774_0.541|GO:0003676_0.537|GO:0009893_0.533|GO:0010604_0.528|GO:0009892_0.523|GO:0031325_0.523|GO:0003723_0.517|GO:0009891_0.516|GO:0065008_0.515|GO:0019219_0.514|GO:0031328_0.509|GO:0031324_0.508|GO:0010605_0.507|GO:0051252_0.507|GO:0010557_0.503|GO:0006351_0.501
|
IPR001876+21-51_26-45+|IPR001878+788-804_869-885_962-978+|IPR012677+65-153+|IPR035979+65-148+|IPR041591+203-249+|IPR051195+316-1146+
|
SM00343+788-804_869-885_962-978+
|
PF17780+203-249+OCRE_domain
|
— |
PTHR31780+316-1146+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-13;257-774;1013-1410
|
2.000
|
14-256;775-1012
|
5mfy_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
161128.460
|
5.136
|
-37.500
|
38.582
|
6.738
|
59.716
|
40.284
|
18.582
|
20.000
|
43.121
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2980.432
|
2414.579
|
2096.248
|
2021.041
|
2461.169
|
2257.579
|
1787.127
|
1205.086
|
2992.323
|
5454.090
|
4399.047
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.435
|
-0.394
|
— |
0.253
|
— |
-0.326
|
-1.012
|
0.712
|
— | — | — | — | — |
No JSON data available for plots.