Hg_chrom6_TN10mRNA_13131
Organism: Heterodera glycines Gene Locus: chr6:12043851-12044577 Feature type: polypeptideProtein Sequence
Length: 147
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.345 | 0.949 | 1.237 | 0.235 | 1.134 | 0.174 | 1.701 | 0.34 | 0.605 | 1.379 | 0.309 | 3.201 | 1.134 | 0.392 | 1.527 | 0.292 | 1.115 | 0.928 | 1.57 | 1.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12372
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.814
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — |
39-63
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.305
|
0.252
|
0.015
|
0.312
|
0.201
|
0.051
|
0.160
|
0.137
|
0.279
|
0.736
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q9UU77.1 Ankyrin repeat-containing protein P1E11.10 [Schizosaccharomyces pombe 972h-]
|
XP_023177418.1 myotrophin [Drosophila hydei]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.731|GO:0005575_0.704|GO:0110165_0.695|GO:0009987_0.649|GO:0003674_0.633|GO:0016020_0.574|GO:0005622_0.543
|
IPR002110+38-77_60-135_81-110_81-113+|IPR036770+35-146_59-138+
|
SM00248+38-77_81-110+
|
PF12796+60-135+Ankyrin_repeats_(3_copies)
|
— |
PTHR24171+60-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-147
|
4hb5_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
15935.080
|
4.495
|
-5.500
|
23.810
|
10.204
|
37.415
|
62.585
|
10.204
|
13.605
|
54.422
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
78.234
|
7.347
|
14.995
|
31.067
|
40.470
|
25.212
|
35.010
|
26.430
|
61.120
|
228.734
|
156.899
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
1.943
|
1.166
|
— |
-0.669
|
— | — |
0.550
|
— | — | — | — | — |
No JSON data available for plots.