SCN Proteipedia

Hg_chrom6_TN10mRNA_13132

Organism: Heterodera glycines Gene Locus: chr6:12045163-12048748 Feature type: polypeptide

Protein Sequence

Length: 691

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.228	1.212	0.658	0.299	0.868	2.004	1.327	0.724	1.061	0.645	0.789	2.894	1.286	0.863	1.329	0.972	0.522	0.789	0.334	0.936	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12373	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.620	0.105	0.023	0.576	0.151	0.123	0.119	0.014	0.096	0.060

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002372	2.000	2.000	Hsc_gene_19385.t1;Hsc_gene_23315.t1	Hsc_gene_1706.t1;Hsc_gene_1706.t2;Hsc_gene_19385.t1;Hsc_gene_23315.t1	—	Q13310.1 Polyadenylate-binding protein 4 [Homo sapiens]	KAF7635648.1 Polyadenylate-binding protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.877\|GO:0110165_0.875\|GO:0008150_0.727\|GO:0005622_0.719\|GO:0016020_0.694\|GO:0003674_0.666\|GO:0043226_0.646\|GO:0009987_0.644\|GO:0005488_0.622\|GO:0097159_0.574\|GO:0005737_0.559\|GO:0043229_0.559\|GO:0065007_0.555\|GO:0003676_0.551\|GO:0043227_0.541\|GO:0008152_0.525\|GO:0044238_0.524\|GO:0044237_0.514\|GO:0009058_0.512\|GO:0043170_0.508\|GO:0050789_0.507\|GO:0009059_0.502\|GO:0044249_0.502	IPR000504+34-112_35-108_36-106_122-199_123-195_124-191_215-297_216-287_217-282_326-393_326-396_326-400+\|IPR002004+598-680_606-654_610-676+\|IPR006515+34-654+\|IPR012677+8-115_116-203_204-312_326-420+\|IPR034364+35-114+\|IPR035979+34-203_215-404+\|IPR036053+597-654+\|IPR045305+120-196+	SM00360+35-108_123-195_216-287_326-396+\|SM00517+610-676+	PF00076+36-106_124-191_217-282_326-393+RNA_recognition_motif\|PF00658+606-654+Poly-adenylate_binding_protein,_unique_domain	G3DSA:3.30.70.330:FF:000003+116-203+Polyadenylate-binding_protein\|G3DSA:3.30.70.330:FF:000021+25-115+Polyadenylate-binding_protein\|G3DSA:3.30.70.330:FF:000091+305-410+Polyadenylate-binding_protein	PTHR24012+23-230+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	443-613;676-691	2.000	1-442;614-675	6r5k_H	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.940	75468.490	9.928	25.000	21.997	9.696	45.007	54.993	13.169	8.828	51.085

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	26897.312	64489.881	45333.631	26102.508	19145.177	19436.957	18385.357	33162.793	26718.666	12865.625	18802.643

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.736	-1.442	-0.689	-0.479	—	—	0.667	-0.708	—	—	—	—	—

No JSON data available for plots.

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