SCN Proteipedia

Hg_chrom6_TN10mRNA_13133

Organism: Heterodera glycines Gene Locus: chr6:12050678-12056393 Feature type: polypeptide

Protein Sequence

Length: 716

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.958	0.942	0.99	0.867	1.047	0.788	0.898	1.047	1.117	1.302	0.91	1.643	1.086	0.859	0.969	0.638	0.962	1.397	1.074	0.945	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12374	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion\|endoplasmic_reticulum	—	—	—	—	—	—	—	—	0.000	—	—	0.131	0.778	0.348	0.326	0.727	0.266	0.124	0.173	0.194	0.152

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002922	2.000	1.000	Hsc_gene_19386.t1	Hsc_gene_19381.t1;Hsc_gene_19382.t1;Hsc_gene_19383.t1;Hsc_gene_19386.t1;Hsc_gene_3555.t1	—	Q9JID6.1 Long-chain-fatty-acid--CoA ligase 1 [Cavia porcellus]	KAI1714218.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004467\|GO:0006631	GO:0008150_0.949\|GO:0009987_0.880\|GO:0003674_0.874\|GO:0008152_0.807\|GO:0005575_0.789\|GO:0110165_0.785\|GO:0003824_0.748\|GO:0044237_0.732\|GO:0044238_0.725\|GO:0016020_0.702\|GO:0005622_0.699\|GO:0044281_0.695\|GO:0005737_0.678\|GO:0006082_0.658\|GO:0019752_0.658\|GO:0043436_0.658\|GO:0032787_0.649\|GO:0043226_0.641\|GO:0006629_0.639\|GO:0016787_0.638\|GO:0044255_0.630\|GO:0006631_0.626\|GO:0043229_0.623\|GO:0043227_0.614\|GO:0016874_0.597\|GO:0016405_0.590\|GO:0016877_0.590\|GO:0001676_0.589\|GO:0043231_0.588\|GO:0016462_0.586\|GO:0016817_0.586\|GO:0016818_0.586\|GO:0017111_0.585\|GO:0016887_0.580\|GO:0140657_0.580\|GO:0004467_0.571\|GO:0015645_0.571\|GO:0016878_0.571\|GO:0120515_0.571	IPR000873+130-537+\|IPR020845+291-302+\|IPR042099+121-570+\|IPR045311+129-712+	—	PF00501+130-537+AMP-binding_enzyme	—	PTHR43272+83-712+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-716	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.568	79379.600	6.551	0.500	24.581	10.615	42.039	57.961	12.849	11.732	51.816

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	1814.751	1396.736	1441.091	1916.440	2397.061	2163.544	3034.863	2096.708	1557.812	1353.760	1441.211

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.183	0.319	0.519	0.291	—	0.498	—	0.673	—	—	—	—	—

No JSON data available for plots.

Back to Browser