Hg_chrom6_TN10mRNA_13136
Organism: Heterodera glycines Gene Locus: chr6:12066036-12070337 Feature type: polypeptideProtein Sequence
Length: 298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.741 | 0.78 | 1.098 | 0.81 | 1.734 | 1.377 | 0.439 | 1.678 | 0.746 | 1.27 | 1.017 | 1.382 | 0.746 | 1.226 | 1.712 | 0.767 | 0.825 | 0.763 | 0.516 | 1.086 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12377
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RGSLKRKKPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.227
|
0.154
|
0.036
|
0.799
|
0.038
|
0.094
|
0.080
|
0.016
|
0.376
|
0.204
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010909
|
1.000
|
1.000
|
Hsc_gene_19401.t1
|
Hsc_gene_19401.t1
|
— |
Q9NEZ5.2 LIM domain-containing protein unc-95 [Caenorhabditis elegans]
|
KAH7726687.1 Protein UNC-95 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.901|GO:0110165_0.901|GO:0003674_0.831|GO:0005622_0.821|GO:0005488_0.810|GO:0005515_0.763|GO:0043226_0.708|GO:0043229_0.692|GO:0008150_0.685|GO:0016020_0.621|GO:0005737_0.583|GO:0043228_0.574|GO:0043232_0.574
|
IPR001781+216-282_217-275_218-257_218-278+
|
SM00132+217-275+
|
PF00412+218-278+LIM_domain
|
G3DSA:2.10.110.10:FF:000009+213-280+Paxillin_isoform_1
|
— |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-65;120-182
|
2.000
|
66-119;183-298
|
6u4n_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
34628.150
|
6.656
|
1.000
|
34.899
|
10.403
|
54.027
|
45.973
|
18.456
|
16.443
|
43.624
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
510.627
|
189.087
|
999.226
|
430.531
|
262.525
|
1010.828
|
160.495
|
1492.951
|
121.985
|
437.886
|
302.500
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.174
|
1.049
|
-1.107
|
-0.745
|
1.959
|
-2.646
|
0.457
|
-3.075
|
— | — | — | — | — |
No JSON data available for plots.