Hg_chrom6_TN10mRNA_13138
Organism: Heterodera glycines Gene Locus: chr6:12075291-12076809 Feature type: polypeptideProtein Sequence
Length: 205
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.021 | 1.248 | 0.71 | 2.019 | 0.813 | 0.75 | 0.929 | 0.732 | 1.084 | 0.857 | 1.256 | 1.148 | 1.626 | 0.563 | 0.498 | 1.324 | 0.88 | 0.517 | 2.251 | 1.578 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12379
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-23
|
0.983
|
1.000
|
0.000
|
0.000
|
0.279
|
0.252
|
0.041
|
0.203
|
0.158
|
0.107
|
0.086
|
0.014
|
0.202
|
0.882
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010911
|
1.000
|
1.000
|
Hsc_gene_19403.t1
|
Hsc_gene_19403.t1
|
— |
P81018.2 Ladderlectin [Oncorhynchus mykiss]
|
KAH7711450.1 C-type lectin [Aphelenchus avenae]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.758|GO:0110165_0.755|GO:0008150_0.599|GO:0016020_0.577|GO:0003674_0.534|GO:0009987_0.530|GO:0071944_0.521
|
IPR001304+26-192_47-181_55-193+|IPR016186+25-204+|IPR016187+4-196+|IPR050111+22-195+
|
SM00034+26-192+
|
PF00059+55-193+Lectin_C-type_domain
|
— |
PTHR22803+22-195+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-205
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
22904.080
|
8.055
|
5.500
|
20.976
|
15.610
|
43.902
|
56.098
|
12.195
|
8.780
|
52.683
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
skyblue
|
494.455
|
8.661
|
15.716
|
3.883
|
5.167
|
4943.092
|
699.599
|
62.417
|
4.643
|
7.808
|
6.451
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.294
|
-1.909
|
— |
9.908
|
-2.810
|
-6.428
|
3.635
|
— | — | — | — | — |