SCN Proteipedia

Hg_chrom6_TN10mRNA_13142

Organism: Heterodera glycines Gene Locus: chr6:12095879-12097643 Feature type: polypeptide

Protein Sequence

Length: 199

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.701	1.402	0.914	1.386	0.419	1.16	0.299	1.508	1.563	1.494	1.066	0.887	1.675	0.773	0.513	1.795	0.659	0.99	1.933	0.443	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12383	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	extracellular	—	—	8-49	0.874	77-101	0.997	—	—	0.003	—	—	0.253	0.429	0.057	0.405	0.185	0.146	0.188	0.008	0.355	0.483

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	Hsc_gene_19406.t1	—	Q95Y52.1 Probable ligand-gated ion channel 46 [Caenorhabditis elegans]	KAI3420929.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.918\|GO:0005575_0.884\|GO:0009987_0.857\|GO:0110165_0.855\|GO:0065007_0.828\|GO:0050789_0.814\|GO:0016020_0.786\|GO:0003674_0.755\|GO:0050794_0.692\|GO:0051179_0.688\|GO:0023052_0.680\|GO:0007154_0.679\|GO:0051234_0.674\|GO:0006810_0.672\|GO:0050896_0.633\|GO:0055085_0.630\|GO:0006811_0.628\|GO:0034220_0.626\|GO:0071944_0.613\|GO:0005886_0.600\|GO:0051716_0.578\|GO:0038023_0.550\|GO:0060089_0.550\|GO:0005215_0.547\|GO:0005216_0.547\|GO:0015075_0.547\|GO:0015267_0.547\|GO:0015276_0.547\|GO:0022803_0.547\|GO:0022834_0.547\|GO:0022836_0.547\|GO:0022857_0.547\|GO:0032501_0.543\|GO:0043226_0.532\|GO:0005230_0.524\|GO:0007267_0.516\|GO:0006820_0.515\|GO:0006821_0.515\|GO:0015698_0.515\|GO:0098656_0.515\|GO:0007165_0.509	IPR006201+104-193+\|IPR006202+98-189+\|IPR036734+85-198_98-193+	—	PF02931+98-189+Neurotransmitter-gated_ion-channel_ligand_binding_domain	—	PTHR18945+104-193+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-199	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.873	22403.920	8.309	7.000	20.101	13.065	47.236	52.764	12.563	7.538	50.754

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	29.530	31.767	42.304	18.308	7.986	5.738	6.291	26.742	3.278	74.559	44.010

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.932	-1.099	-1.234	—	—	2.124	-1.948	—	—	—	—	—

No JSON data available for plots.

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