SCN Proteipedia

Hg_chrom6_TN10mRNA_13143

Organism: Heterodera glycines Gene Locus: chr6:12097720-12113491 Feature type: polypeptide

Protein Sequence

Length: 2,434

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.917	1.519	1.173	0.411	0.897	1.317	0.636	1.479	1.461	1.233	0.585	1.378	1.335	0.964	0.981	1.021	1.03	0.959	0.853	0.508	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_12384	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-ppJ2_pJ2_J3_Females	0.982

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.250	0.065	0.013	0.294	0.135	0.309	0.332	0.045	0.724	0.116

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010914	1.000	1.000	Hsc_gene_19408.t1	—	—	Q6V0I7.2 Protocadherin Fat 4 [Homo sapiens]	KAI3420926.1 cellobiose dehydrogenase [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509\|GO:0005886\|GO:0007155\|GO:0007156\|GO:0016020	GO:0008150_0.893\|GO:0005575_0.821\|GO:0110165_0.815\|GO:0009987_0.755\|GO:0016020_0.664\|GO:0032501_0.593\|GO:0032502_0.580\|GO:0048856_0.571\|GO:0005622_0.559\|GO:0071944_0.530\|GO:0065007_0.521\|GO:0005886_0.503\|GO:0007275_0.501	IPR002126+1-67_3-69_70-196_192-299_211-297_300-409_306-400_321-407_346-365_409-438_410-522_414-513_431-520_487-499_501-520_553-648_556-642_888-1008_1248-1344_1248-1354_1269-1352_1301-1327_1356-1483_1364-1442_1377-1464_1486-1588_1491-1579_1507-1586_1590-1689_1596-1679_1611-1687_1671-1688_1690-1807_1711-1803_1808-1924_1927-2039_1948-2033_2040-2178_2179-2303+\|IPR015919+2-69_62-165_191-299_287-396_397-532_515-635_889-959_1248-1354_1342-1454_1485-1592_1582-1682_1677-1802_1801-1900_1912-2054_2166-2242+\|IPR020894+397-407_510-520_1342-1352_1677-1687_1912-1922+\|IPR050174+2004-2342+	SM00112+1-67_211-297_321-407_431-520_556-642_1269-1352_1377-1464_1507-1586_1611-1687_1711-1803_1948-2033+	PF00028+306-400_414-513_1248-1344_1364-1442_1491-1579_1596-1679+Cadherin_domain	G3DSA:2.60.40.60:FF:000020+407-526+Dachsous_cadherin-related_1b\|G3DSA:2.60.40.60:FF:000092+297-406+Protocadherin_8	PTHR24028+2004-2342+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-2434	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.541	270952.290	5.421	-41.000	23.459	10.600	48.562	51.438	11.627	11.832	52.177

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	turquoise	442.733	165.582	286.570	176.109	165.017	226.108	300.295	176.720	178.188	1242.166	786.176

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.562	—	-0.593	—	0.469	0.417	-0.465	0.907	—	—	—	—	—

No JSON data available for plots.

Back to Browser