Hg_chrom6_TN10mRNA_13145
Organism: Heterodera glycines Gene Locus: chr6:12117834-12123351 Feature type: polypeptideProtein Sequence
Length: 669
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.73 | 1.321 | 1.44 | 0.206 | 1.146 | 1.341 | 0.765 | 1.121 | 1.694 | 1.313 | 0.294 | 0.703 | 1.37 | 1.179 | 1.129 | 0.876 | 0.907 | 0.997 | 0.46 | 0.835 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12386
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
19-Not_Clustered
|
0.708
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — |
0.948
|
0.278
|
0.000
|
— |
0.347
|
0.402
|
0.051
|
0.308
|
0.133
|
0.116
|
0.173
|
0.080
|
0.384
|
0.296
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010916
|
1.000
|
1.000
|
Hsc_gene_19410.t1
|
Hsc_gene_19410.t1
|
— |
Q8TAB3.3 Protocadherin-19 [Homo sapiens]
|
KAI3420924.1 Protocadherin-16 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005886|GO:0007155|GO:0007156|GO:0016020|GO:0098609
|
GO:0008150_0.878|GO:0005575_0.703|GO:0110165_0.703|GO:0009987_0.642|GO:0032501_0.623|GO:0032502_0.616|GO:0048856_0.616|GO:0007275_0.596|GO:0048731_0.563
|
IPR002126+15-125_19-127_127-156_128-239_134-230_149-237_204-216_218-237_237-250_240-352_244-347_261-355_401-484_468-485_532-621_537-615+|IPR015919+121-231_227-348_531-609+|IPR020894+227-237_474-484+|IPR039808+191-644+
|
SM00112+15-125_149-237_261-355_401-484_537-615+
|
PF00028+134-230_244-347+Cadherin_domain
|
G3DSA:2.60.40.60:FF:000007+121-234+Protocadherin_alpha_2
|
PTHR24027+191-644+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-669
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.731
|
74763.730
|
4.279
|
-41.500
|
24.514
|
10.613
|
47.085
|
52.915
|
9.716
|
14.798
|
51.271
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
601.308
|
36.154
|
24.721
|
19.372
|
22.434
|
32.672
|
37.629
|
13.487
|
13.475
|
2550.690
|
1463.312
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.775
|
-1.038
|
— | — |
0.557
|
— |
-1.389
|
1.623
|
-4.984
|
— |
-4.035
|
— | — |