Hg_chrom6_TN10mRNA_13150
Organism: Heterodera glycines Gene Locus: chr6:12159259-12163611 Feature type: polypeptideProtein Sequence
Length: 325
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 0.859 | 0.839 | 1.061 | 0.615 | 1.657 | 0.659 | 1.846 | 0.957 | 1.123 | 0.42 | 2.353 | 2.222 | 0.533 | 1.256 | 1.099 | 1.059 | 1.119 | 0.71 | 0.995 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12390
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.007
|
— | — |
0.130
|
0.168
|
0.031
|
0.169
|
0.266
|
0.385
|
0.239
|
0.019
|
0.805
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004484
|
2.000
|
1.000
|
Hsc_gene_19414.t1
|
Hsc_gene_19414.t1;Hsc_gene_19414.t2;Hsc_gene_19414.t3;Hsc_gene_19414.t4
|
— | — |
KAH7721902.1 NSY-4 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.971|GO:0009987_0.931|GO:0005575_0.925|GO:0110165_0.925|GO:0071944_0.913|GO:0016020_0.896|GO:0005886_0.891|GO:0007155_0.700|GO:0098609_0.689|GO:0090136_0.670
|
IPR010761+8-216+|IPR050579+11-210+
|
— |
PF07062+8-216+Clc-like
|
G3DSA:1.20.140.150:FF:000039+5-210+Neuronal_SYmmetry
|
PTHR10671+11-210+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
256-325
|
1.000
|
1-255
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
37048.470
|
7.835
|
8.000
|
20.923
|
16.000
|
45.231
|
54.769
|
12.615
|
8.308
|
48.308
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightyellow
|
961.849
|
1195.301
|
957.683
|
825.024
|
1082.289
|
1313.595
|
315.898
|
1219.584
|
21.017
|
1601.310
|
924.042
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.546
|
-0.672
|
— |
0.359
|
0.295
|
-2.048
|
— |
-1.812
|
-6.362
|
5.478
|
— | — | — |
No JSON data available for plots.