Hg_chrom6_TN10mRNA_13151
Organism: Heterodera glycines Gene Locus: chr6:12167108-12174950 Feature type: polypeptideProtein Sequence
Length: 821
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 0.991 | 0.908 | 0.63 | 0.65 | 2.186 | 0.798 | 1.096 | 0.974 | 1.218 | 0.388 | 1.218 | 1.117 | 1.195 | 1.442 | 1.322 | 1.138 | 0.757 | 1.218 | 0.86 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12391
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.949
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKSAIYKIESNDLKRWER
|
9-29
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.124
|
0.126
|
0.030
|
0.207
|
0.167
|
0.392
|
0.293
|
0.017
|
0.824
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010919
|
1.000
|
1.000
|
Hsc_gene_19415.t1
|
Hsc_gene_19415.t1
|
— | — |
KAI1726637.1 clc-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
— |
IPR010761+21-237+
|
— |
PF07062+21-237+Clc-like
|
— |
PTHR35574+11-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
266-821
|
1.000
|
1-265
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
91843.340
|
8.217
|
15.000
|
20.706
|
10.719
|
49.695
|
50.305
|
11.815
|
8.892
|
51.766
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightyellow
|
1115.093
|
797.828
|
296.333
|
1456.002
|
1720.017
|
1266.036
|
451.381
|
795.409
|
4.660
|
2331.411
|
1334.232
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.658
|
0.731
|
2.406
|
0.208
|
-0.427
|
-1.479
|
-0.784
|
-0.672
|
-9.146
|
8.552
|
— | — | — |
No JSON data available for plots.