Hg_chrom6_TN10mRNA_13157
Organism: Heterodera glycines Gene Locus: chr6:12204622-12212236 Feature type: polypeptideProtein Sequence
Length: 364
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.086 | 0.767 | 0.599 | 0.758 | 0.824 | 1.479 | 0.556 | 0.824 | 0.733 | 1.299 | 1.29 | 0.97 | 1.068 | 1.268 | 2.187 | 1.295 | 0.811 | 0.583 | 0.845 | 0.485 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_12397
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.932
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRLRKARLR,KRILLRSTRGKFCKR,KRARWKQDYKCRKMGR
|
1-23
|
0.978
|
44-64
|
0.813
|
— | — |
0.000
|
— | — |
0.637
|
0.283
|
0.009
|
0.453
|
0.071
|
0.033
|
0.070
|
0.153
|
0.128
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010172
|
2.000
|
0.000
|
0.000
|
— | — | — |
KAI3407797.1 hypothetical protein GPALN_014135 [Globodera pallida]
|
KAK5079577
|
0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
219-364
|
1.000
|
1-218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.604
|
41184.530
|
11.274
|
43.000
|
29.121
|
8.242
|
52.198
|
47.802
|
20.879
|
8.242
|
47.253
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
magenta
|
254.608
|
73.564
|
457.536
|
347.102
|
310.482
|
335.176
|
250.076
|
530.918
|
117.773
|
161.261
|
142.624
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.408
|
2.102
|
-0.290
|
-0.192
|
— |
-0.413
|
0.561
|
-0.944
|
— | — | — | — | — |
No JSON data available for plots.