Hg_chrom7_TN10mRNA_13161
Organism: Heterodera glycines Gene Locus: chr7:26333-29870 Feature type: polypeptideProtein Sequence
Length: 273
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 1.448 | 0.599 | 1.137 | 0.855 | 1.127 | 0.698 | 0.549 | 0.977 | 1.238 | 0.833 | 1.293 | 2.239 | 1.057 | 0.673 | 1.518 | 0.901 | 0.833 | 0.564 | 0.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12401
|
— | — |
0.889
|
— |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_23353
|
— | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
43-66
|
0.883
|
33-53
|
0.996
|
— | — |
0.000
|
— | — |
0.172
|
0.048
|
0.084
|
0.168
|
0.123
|
0.290
|
0.147
|
0.004
|
0.145
|
0.852
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004485
|
2.000
|
1.000
|
Hsc_gene_23353.t1
|
Hsc_gene_23353.t1
|
— | — |
QPO14718.1 effector protein 24A12, partial [Heterodera glycines]
|
WP_287499410
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-273
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
29848.110
|
7.481
|
2.500
|
18.315
|
11.355
|
45.055
|
54.945
|
9.890
|
8.425
|
54.579
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
12.548
|
0.306
|
1.757
|
0.368
|
0.560
|
5.015
|
4.654
|
80.916
|
0.000
|
19.807
|
11.319
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
3.150
|
— |
3.909
|
-3.979
|
— | — | — | — | — |
No JSON data available for plots.