Hg_chrom7_TN10mRNA_13162
Organism: Heterodera glycines Gene Locus: chr7:32430-36684 Feature type: polypeptideProtein Sequence
Length: 445
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 1.045 | 0.981 | 1.317 | 0.861 | 0.98 | 0.91 | 1.124 | 0.899 | 1.306 | 0.885 | 1.586 | 1.436 | 1.037 | 1.055 | 0.642 | 0.884 | 1.158 | 0.519 | 0.793 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12402
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-23
|
0.986
|
27-67
|
0.992
|
— | — |
0.000
|
— | — |
0.145
|
0.946
|
0.046
|
0.182
|
0.016
|
0.048
|
0.032
|
0.009
|
0.044
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002373
|
3.000
|
1.000
|
Hsc_gene_23349.t1
|
Hsc_gene_23349.t1
|
— |
Q18040.3 Probable ornithine aminotransferase, mitochondrial [Caenorhabditis elegans]
|
KAF7640440.1 Ornithine aminotransferase [Meloidogyne graminicola]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004587|GO:0008483|GO:0030170
|
GO:0008150_0.785|GO:0003674_0.688|GO:0005575_0.574|GO:0008152_0.574|GO:0003824_0.573|GO:0009987_0.570|GO:0110165_0.562
|
IPR005814+44-199_51-441_58-440_217-444+|IPR010164+48-441+|IPR015421+101-351+|IPR015422+56-431+|IPR015424+45-442+|IPR049704+267-304+|IPR050103+38-441+
|
— |
PF00202+58-440+Aminotransferase_class-III
|
G3DSA:3.40.640.10:FF:000011+101-351+Ornithine_aminotransferase|G3DSA:3.90.1150.10:FF:000152+337-444+Ornithine_aminotransferase
|
PTHR11986+38-441+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-445
|
7ta1_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
49148.710
|
7.638
|
7.000
|
23.820
|
10.787
|
42.022
|
57.978
|
13.258
|
10.562
|
52.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
968.859
|
402.692
|
703.026
|
890.651
|
2327.999
|
2373.205
|
1517.385
|
1701.175
|
579.208
|
85.804
|
297.263
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
1.008
|
0.450
|
1.354
|
— |
-0.635
|
-0.587
|
— | — | — |
4.915
|
— | — |
No JSON data available for plots.