Hg_chrom7_TN10mRNA_13163
Organism: Heterodera glycines Gene Locus: chr7:32430-36684 Feature type: polypeptideProtein Sequence
Length: 428
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.924 | 1.032 | 0.977 | 1.289 | 0.857 | 0.959 | 0.946 | 1.168 | 0.831 | 1.358 | 0.92 | 1.512 | 1.428 | 0.988 | 1.097 | 0.634 | 0.919 | 1.168 | 0.539 | 0.825 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12402
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-23
|
0.986
|
27-67
|
0.992
|
— | — |
0.000
|
— | — |
0.148
|
0.941
|
0.075
|
0.167
|
0.016
|
0.053
|
0.032
|
0.011
|
0.054
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002373
|
3.000
|
1.000
|
Hsc_gene_23349.t1
|
Hsc_gene_23349.t1
|
— |
Q18040.3 Probable ornithine aminotransferase, mitochondrial [Caenorhabditis elegans]
|
KAI1724627.1 aminotransferase class-III domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008483|GO:0030170
|
GO:0008150_0.783|GO:0003674_0.686|GO:0005575_0.578|GO:0008152_0.572|GO:0009987_0.571|GO:0003824_0.570|GO:0110165_0.565
|
IPR005814+45-199_51-424_58-218_221-427_222-423+|IPR015421+101-334+|IPR015422+56-414+|IPR015424+45-425+|IPR049704+250-287+|IPR050103+38-424+
|
— |
PF00202+58-218_222-423+Aminotransferase_class-III
|
G3DSA:3.40.640.10:FF:000011+101-334+Ornithine_aminotransferase|G3DSA:3.90.1150.10:FF:000152+320-427+Ornithine_aminotransferase
|
PTHR11986+38-424+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-428
|
7ta1_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
47389.680
|
7.946
|
9.000
|
24.299
|
10.981
|
42.523
|
57.477
|
13.785
|
10.514
|
52.336
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
968.859
|
402.692
|
703.026
|
890.651
|
2327.999
|
2373.205
|
1517.385
|
1701.175
|
579.208
|
85.804
|
297.263
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
1.008
|
0.450
|
1.354
|
— |
-0.635
|
-0.587
|
— | — | — |
4.915
|
— | — |
No JSON data available for plots.