Hg_chrom7_TN10mRNA_13164
Organism: Heterodera glycines Gene Locus: chr7:40172-45412 Feature type: polypeptideProtein Sequence
Length: 599
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.592 | 1.747 | 0.911 | 0.461 | 0.779 | 1.584 | 0.934 | 1.753 | 0.668 | 0.812 | 0.885 | 0.687 | 0.556 | 0.963 | 0.988 | 1.24 | 1.013 | 1.062 | 0.128 | 0.098 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12403
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
GAKKRNQKKKSSSK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.382
|
0.147
|
0.005
|
0.805
|
0.212
|
0.108
|
0.286
|
0.018
|
0.097
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010922
|
1.000
|
1.000
|
Hsc_gene_23351.t1
|
— | — | — |
MCP9260308.1 Spermatogenesis-associated serine-rich protein 2 [Dirofilaria immitis]
|
No
|
-0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.907|GO:0110165_0.896|GO:0005622_0.818|GO:0005737_0.696|GO:0003674_0.656|GO:0005488_0.632|GO:0097159_0.543|GO:0003676_0.528
|
IPR009060+13-76+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6;59-264;382-599
|
2.000
|
7-58;265-381
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.909
|
62845.590
|
8.688
|
16.500
|
23.873
|
6.010
|
52.421
|
47.579
|
14.190
|
9.683
|
62.270
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1749.081
|
1673.634
|
1247.574
|
1712.339
|
2098.488
|
3889.806
|
2855.180
|
788.198
|
2442.978
|
470.541
|
1315.871
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.652
|
-0.104
|
0.564
|
0.261
|
0.906
|
-0.437
|
-2.408
|
1.998
|
2.242
|
— | — | — | — |
No JSON data available for plots.