Hg_chrom7_TN10mRNA_13165
Organism: Heterodera glycines Gene Locus: chr7:50874-54556 Feature type: polypeptideProtein Sequence
Length: 624
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.95 | 1.491 | 1.02 | 0.884 | 0.775 | 1.315 | 1.068 | 2.804 | 0.962 | 1.018 | 0.656 | 2.451 | 1.068 | 0.894 | 0.687 | 1.19 | 0.814 | 0.68 | 0.863 | 0.518 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12404
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.923
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.641
|
0.111
|
0.021
|
0.520
|
0.261
|
0.230
|
0.139
|
0.140
|
0.135
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004486
|
2.000
|
1.000
|
Hsc_gene_23316.t1
|
Hsc_gene_23316.t1
|
— |
Q5ZIF3.1 Ufm1-specific protease 2 [Gallus gallus]
|
KAI3413750.1 WD and tetratricopeptide repeat protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.798|GO:0003674_0.752|GO:0008150_0.707|GO:0110165_0.667|GO:0009987_0.638|GO:0003824_0.618|GO:0008152_0.591|GO:0005622_0.587|GO:0044238_0.563|GO:0016787_0.560|GO:0140096_0.550|GO:0043170_0.537|GO:0008233_0.536|GO:0065007_0.523|GO:0005737_0.517|GO:0050789_0.508
|
IPR012462+426-610+|IPR038765+440-587+|IPR051250+378-615+
|
— |
PF07910+426-610+Peptidase_family_C78
|
— |
PTHR48153+378-615+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-360
|
1.000
|
361-624
|
5ejj_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.735
|
68135.410
|
6.569
|
1.500
|
23.558
|
12.340
|
48.397
|
51.603
|
13.301
|
10.256
|
54.167
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
365.940
|
460.033
|
440.714
|
406.698
|
381.114
|
372.837
|
406.379
|
376.578
|
199.557
|
384.687
|
305.346
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.291
|
-0.315
|
— | — | — | — | — |
0.251
|
— | — | — | — | — |
No JSON data available for plots.