SCN Proteipedia

Hg_chrom7_TN10mRNA_13168

Organism: Heterodera glycines Gene Locus: chr7:70438-84822 Feature type: polypeptide

Protein Sequence

Length: 1,317

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.927	0.742	0.911	0.576	0.886	1.071	0.85	1.291	1.299	1.375	0.725	2.01	1.244	1.037	1.038	1.226	1.021	0.978	0.759	0.447	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12407	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.812

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RKRR,RRTGKLFGGLIADIRRRAP	—	—	—	—	—	—	0.000	—	—	0.076	0.141	0.023	0.136	0.378	0.521	0.235	0.006	0.880	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004487	1.000	2.000	Hsc_gene_23322.t1;Hsc_gene_23322.t2	Hsc_gene_23322.t1;Hsc_gene_23322.t2	—	Q32LP4.1 Sodium-driven chloride bicarbonate exchanger [Bos taurus]	KAI1710224.1 HCO3- transporter family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005452\|GO:0006820\|GO:0008509\|GO:0016020	GO:0008150_0.976\|GO:0009987_0.948\|GO:0051179_0.924\|GO:0006810_0.918\|GO:0051234_0.918\|GO:0005575_0.874\|GO:0110165_0.874\|GO:0055085_0.872\|GO:0003674_0.865\|GO:0016020_0.846\|GO:0006811_0.823\|GO:0071944_0.810\|GO:0005215_0.805\|GO:0022857_0.805\|GO:0005886_0.802\|GO:0034220_0.787\|GO:0015075_0.738\|GO:0098660_0.738\|GO:0015318_0.733\|GO:0015711_0.659\|GO:0022804_0.659\|GO:0015291_0.656\|GO:0006812_0.640\|GO:0030001_0.639\|GO:0098655_0.635\|GO:0008514_0.626\|GO:0022853_0.625\|GO:0098662_0.624\|GO:0015701_0.623\|GO:0006814_0.612\|GO:0008324_0.606\|GO:0015106_0.605\|GO:0065007_0.604\|GO:0035725_0.595\|GO:0022890_0.580\|GO:0046873_0.580\|GO:0015081_0.547\|GO:0098590_0.532	IPR003020+128-1148_143-1139_380-392_909-918_923-936+\|IPR003024+171-177_390-398_431-439_441-449_451-463+\|IPR011531+543-1124+\|IPR013769+141-449+\|IPR016152+137-475_142-465+	—	PF00955+543-1124+HCO3-_transporter_integral_membrane_domain\|PF07565+141-449+Band_3_cytoplasmic_domain	G3DSA:1.10.287.570:FF:000001+555-596+Anion_exchange_protein	PTHR11453+128-1148+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-134;445-536;1191-1317	2.000	135-444;537-1190	7rtm_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.734	144389.050	7.085	11.000	22.779	9.567	44.951	55.049	12.453	10.326	51.632

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	3428.757	4185.807	4515.013	1850.909	1156.572	1725.916	1280.628	3530.144	2253.540	6468.787	4662.253

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.120	-1.315	-1.178	-0.711	0.592	-0.421	0.928	-1.321	—	—	—	—	—

No JSON data available for plots.

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