Hg_chrom7_TN10mRNA_13169
Organism: Heterodera glycines Gene Locus: chr7:90386-107409 Feature type: polypeptideProtein Sequence
Length: 2,442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.857 | 1.048 | 0.916 | 0.748 | 1.037 | 2.079 | 0.512 | 2.007 | 1.028 | 1.312 | 0.769 | 1.229 | 1.24 | 0.929 | 1.162 | 1.188 | 1.014 | 0.602 | 0.819 | 0.662 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12408
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRMTGLPPNAKSKCKNR
|
— | — |
29-56
|
0.951
|
— | — |
0.000
|
— | — |
0.822
|
0.084
|
0.010
|
0.376
|
0.090
|
0.055
|
0.061
|
0.082
|
0.121
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004488
|
1.000
|
2.000
|
Hsc_gene_23323.t1;Hsc_gene_23323.t2
|
Hsc_gene_23323.t1
|
— | — |
KAH7727680.1 Protein Y38C9A.1 [Aphelenchus avenae]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006325
|
— |
IPR011990+86-281_194-698+|IPR033053+1398-1689+
|
— | — | — |
PTHR15502+1398-1689+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-49;402-538;755-799;1805-2442
|
3.000
|
50-401;539-754;800-1804
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
277189.700
|
7.241
|
37.000
|
26.044
|
11.794
|
53.153
|
46.847
|
14.783
|
11.261
|
46.683
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1605.120
|
2002.471
|
1358.955
|
1200.655
|
1283.598
|
1013.174
|
1845.158
|
1049.956
|
1858.746
|
1970.603
|
1922.664
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.789
|
-0.875
|
— | — |
-0.327
|
0.875
|
— |
0.955
|
— | — | — | — | — |
No JSON data available for plots.