SCN Proteipedia

Hg_chrom7_TN10mRNA_13170

Organism: Heterodera glycines Gene Locus: chr7:107772-112347 Feature type: polypeptide

Protein Sequence

Length: 517

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.472	0.855	0.914	0.267	1.451	1.637	0.714	1.644	1.032	1.229	1.436	1.593	0.752	1.19	1.5	0.801	1.046	0.645	1.042	0.683	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12409	—	—	1.444	2.000	1.000	1.000	2.000	1.000	1.000	1.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRR,RRRK,KRKD,QPKRP,KKGFSLAKAQLGKRPVRK,KKSGLPTMKLTNLDKKKKI	—	—	—	—	—	—	0.000	—	—	0.917	0.048	0.012	0.234	0.020	0.021	0.029	0.004	0.028	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010925	1.000	1.000	Hsc_gene_23324.t1	Hsc_gene_23324.t1	—	Q7K3D8.1 DNA methyltransferase 1-associated protein 1 [Drosophila melanogaster]	KAH7726011.1 DNA methyltransferase 1 associated protein 1 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005634\|GO:0006281\|GO:0006338\|GO:0035267\|GO:0045892	GO:0005575_0.934\|GO:0110165_0.930\|GO:0005622_0.905\|GO:0043226_0.861\|GO:0043229_0.838\|GO:0008150_0.828\|GO:0009987_0.787\|GO:0043228_0.761\|GO:0043232_0.761\|GO:0065007_0.712\|GO:0016020_0.702\|GO:0050789_0.700\|GO:0008152_0.692\|GO:0043170_0.692\|GO:0050794_0.686\|GO:0043227_0.643\|GO:0032991_0.628\|GO:0009058_0.617\|GO:0009059_0.617\|GO:0010467_0.617\|GO:0044237_0.617\|GO:0044249_0.617\|GO:0019222_0.608\|GO:0043231_0.603\|GO:0031323_0.598\|GO:0060255_0.594\|GO:0005634_0.590\|GO:0009889_0.582\|GO:0031326_0.582\|GO:0005694_0.580\|GO:0010468_0.576\|GO:0010556_0.576\|GO:0003674_0.556\|GO:0005488_0.556\|GO:0044238_0.529\|GO:0006139_0.507\|GO:0090304_0.504	IPR008468+244-416+\|IPR027109+1-415+\|IPR032563+127-206+	—	PF05499+244-416+DNA_methyltransferase_1-associated_protein_1_(DMAP1)\|PF16282+127-206+SANT/Myb-like_domain_of_DAMP1	G3DSA:1.10.10.60:FF:000087+123-215+DNA_methyltransferase_1-associated_protein_1	PTHR12855+1-415+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-69;201-315;436-517	2.000	70-200;316-435	4iej_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.831	59781.150	9.950	24.500	33.849	9.671	55.899	44.101	20.116	13.733	41.973

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkmagenta	1992.385	1398.527	932.858	586.808	744.214	818.768	1388.880	760.256	2255.218	4538.903	3560.181

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.814	-1.390	-0.560	0.312	—	0.773	—	1.013	—	-1.789	—	—	—

No JSON data available for plots.

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