Hg_chrom7_TN10mRNA_13171
Organism: Heterodera glycines Gene Locus: chr7:112572-120724 Feature type: polypeptideProtein Sequence
Length: 899
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.526 | 0.667 | 0.499 | 0.945 | 1.54 | 0.808 | 1.335 | 0.766 | 1.278 | 0.725 | 0.72 | 1.36 | 0.556 | 1.339 | 1.764 | 1.058 | 0.792 | 0.856 | 0.687 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12410
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KRSR,KRYRAVDVPPKFRRTAK
|
12-48
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.313
|
0.211
|
0.005
|
0.240
|
0.713
|
0.131
|
0.369
|
0.009
|
0.204
|
0.010
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004489
|
1.000
|
2.000
|
Hsc_gene_23325.t1;Hsc_gene_23325.t2
|
Hsc_gene_23325.t1;Hsc_gene_23325.t2
|
— |
Q2TLZ5.1 Macoilin [Pan troglodytes]
|
KAI3413743.1 Transmembrane protein 57 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0023041|GO:0030867
|
GO:0008150_0.981|GO:0005575_0.971|GO:0110165_0.971|GO:0016020_0.947|GO:0071944_0.932|GO:0005886_0.931|GO:0005622_0.882|GO:0043226_0.866|GO:0043229_0.843|GO:0043227_0.804|GO:0043231_0.765|GO:0005737_0.750|GO:0005773_0.750|GO:0012505_0.733|GO:0009987_0.721|GO:0065007_0.708|GO:0050789_0.696|GO:0050794_0.683|GO:0050896_0.618|GO:0051716_0.603|GO:0007154_0.599|GO:0023052_0.590|GO:0007165_0.567
|
IPR019130+5-159_204-261_403-865_406-747+
|
— |
PF09726+5-159_204-261_406-747+Macoilin_family
|
— |
PTHR13289+403-865+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
345-899
|
1.000
|
1-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.931
|
100061.740
|
9.423
|
30.000
|
23.359
|
11.012
|
54.727
|
45.273
|
14.016
|
9.344
|
51.835
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
4077.923
|
9962.302
|
5055.729
|
3231.484
|
2874.319
|
2703.561
|
3360.438
|
5260.382
|
1755.759
|
4356.012
|
3241.618
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.207
|
-1.762
|
-0.538
|
-0.201
|
— |
0.324
|
0.858
|
-0.505
|
-1.435
|
— | — | — | — |
No JSON data available for plots.