Hg_chrom7_TN10mRNA_13172
Organism: Heterodera glycines Gene Locus: chr7:124586-125674 Feature type: polypeptideProtein Sequence
Length: 113
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.72 | 0.823 | 0.483 | 0.305 | 2.36 | 2.269 | 0.737 | 1.327 | 0.59 | 0.837 | 1.475 | 2.603 | 0.246 | 2.042 | 0.361 | 1.391 | 0.29 | 0.536 | 1.361 | 0.521 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12411
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.922
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.740
|
0.124
|
0.023
|
0.347
|
0.079
|
0.079
|
0.047
|
0.015
|
0.129
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004490
|
1.000
|
2.000
|
Hsc_gene_23326.t1;Hsc_gene_23326.t2
|
— | — |
A7S3I2.1 BBSome-interacting protein 1 [Nematostella vectensis]
|
KAI1712825.1 cilia BBSome complex subunit 10 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0034464|GO:0060271
|
GO:0008150_0.932|GO:0009987_0.893|GO:0051179_0.752|GO:0051234_0.737|GO:0051641_0.732|GO:0006810_0.728|GO:0051649_0.711|GO:0051640_0.682|GO:0051656_0.681|GO:0005575_0.679|GO:0051648_0.674|GO:0051650_0.674|GO:0110165_0.674|GO:0005622_0.631|GO:0016020_0.587|GO:0043226_0.577|GO:0005737_0.529|GO:0043227_0.517
|
IPR028233+17-110_22-78+
|
— |
PF14777+22-78+Cilia_BBSome_complex_subunit_10
|
— |
PTHR28596+17-110+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-113
|
0.000
|
— |
6xt9_J
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
12656.130
|
4.799
|
-4.500
|
30.973
|
7.080
|
54.867
|
45.133
|
14.159
|
16.814
|
45.133
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
80.450
|
160.457
|
141.714
|
73.275
|
43.551
|
31.433
|
111.794
|
106.125
|
41.394
|
70.293
|
57.908
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.411
|
-1.268
|
-0.841
|
-0.779
|
— |
1.843
|
1.650
|
— | — | — | — | — | — |
No JSON data available for plots.