Hg_chrom7_TN10mRNA_13179
Organism: Heterodera glycines Gene Locus: chr7:178060-186321 Feature type: polypeptideProtein Sequence
Length: 778
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.285 | 0.986 | 0.584 | 0.665 | 0.493 | 2.505 | 1.27 | 1.992 | 0.857 | 0.851 | 0.273 | 1.512 | 0.785 | 1.36 | 0.682 | 1.561 | 1.222 | 0.623 | 0.494 | 0.378 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12418
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.751
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KREIECAAEHFTQIRASRR
|
— | — |
4-24
|
0.981
|
— | — |
0.000
|
— | — |
0.455
|
0.164
|
0.007
|
0.581
|
0.121
|
0.142
|
0.084
|
0.246
|
0.173
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004491
|
1.000
|
2.000
|
Hsc_gene_23335.t1;Hsc_gene_23335.t2
|
Hsc_gene_23335.t1;Hsc_gene_23335.t2
|
— |
A1L3F4.1 RNA-binding protein MEX3B [Xenopus laevis]
|
ALI88759.1 KH domain-containing protein, partial [Ancylostoma caninum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0003674_0.890|GO:0005488_0.863|GO:0005575_0.693|GO:0110165_0.686|GO:0097159_0.638|GO:0003676_0.619|GO:0005622_0.594|GO:0043226_0.545|GO:0003723_0.543|GO:0043229_0.535
|
IPR004087+155-226_246-313+|IPR004088+158-222_251-310+|IPR036612+156-234_165-228_246-321_247-317+|IPR047226+245-316+|IPR047227+145-497+|IPR047228+158-232+
|
SM00322+155-226_246-313+
|
PF00013+158-222_251-310+KH_domain
|
G3DSA:3.30.1370.10:FF:000012+155-234+Mex-3_RNA-binding_family_member_D
|
PTHR23285+145-497+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-182;272-778
|
1.000
|
183-271
|
5www_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
81013.660
|
6.920
|
7.500
|
15.296
|
8.740
|
47.686
|
52.314
|
9.126
|
6.170
|
60.668
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2664.434
|
12350.712
|
4474.046
|
2904.149
|
2124.280
|
2310.612
|
1203.852
|
1793.564
|
1162.547
|
599.533
|
840.824
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.694
|
-2.225
|
-0.515
|
-0.483
|
— |
-0.933
|
— |
-0.436
|
— | — | — | — | — |
No JSON data available for plots.