Hg_chrom7_TN10mRNA_13182
Organism: Heterodera glycines Gene Locus: chr7:198493-199984 Feature type: polypeptideProtein Sequence
Length: 184
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.442 | 1.138 | 1.087 | 0.75 | 1.268 | 0.697 | 0.323 | 2.174 | 0.725 | 1.395 | 1.318 | 2.558 | 0.906 | 0.523 | 2.107 | 0.699 | 0.98 | 1.318 | 0.836 | 0.639 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12421
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.799
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.675
|
0.316
|
0.052
|
0.333
|
0.151
|
0.035
|
0.048
|
0.006
|
0.074
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010931
|
1.000
|
1.000
|
Hsc_gene_23339.t1
|
Hsc_gene_23339.t1
|
— |
Q921Y2.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Mus musculus]
|
KAI3413735.1 Small subunit (SSU) processome component [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0019843
|
GO:0005575_0.815|GO:0110165_0.815|GO:0005622_0.738|GO:0043226_0.690|GO:0008150_0.658|GO:0043229_0.648|GO:0016020_0.634|GO:0009987_0.611|GO:0043227_0.574|GO:0003674_0.555|GO:0043231_0.520|GO:0043228_0.519|GO:0043232_0.519
|
IPR001912+4-109_5-97+|IPR002942+110-154_110-176+|IPR022801+6-170+|IPR036986+109-182+
|
SM00363+110-176+|SM01390+4-109+
|
PF00163+5-97+Ribosomal_protein_S4/S9_N-terminal_domain|PF01479+110-154+S4_domain
|
— |
PTHR11831+6-170+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-184
|
7mqa_LZ
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.516
|
21824.320
|
10.146
|
14.000
|
36.957
|
10.870
|
55.435
|
44.565
|
23.370
|
13.587
|
41.848
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
1115.112
|
428.347
|
384.127
|
1025.860
|
1098.337
|
739.751
|
1269.227
|
315.481
|
558.068
|
2487.139
|
1660.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.386
|
1.123
|
1.526
|
— |
-0.555
|
0.790
|
-1.332
|
2.151
|
— | — | — | — | — |
No JSON data available for plots.